Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq7 212 2e-52 seq33 199 1e-48 >seq7 Length=1948685 Score = 212 bits (234), Expect = 2e-52 Identities = 145/161 (90%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403 |||||||||||| ||||||||||||||||||||||||||||| | || ||||||||||| Sbjct 1172719 GCATGTATTAGCCATAGAATTACCACGGTTATCCATGTAGTAAAG-ACCATCAAATAAAC 1172777 Query 404 GATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACAT 463 ||||||| |||||||| ||||||||||||| | ||||| | |||||||||||||||| Sbjct 1172778 TATAACTGTTTTAATGAACCATTCGCAGTTTAGCCGTATAAAA-GCTTATACTTAGACAT 1172836 Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||| |||||| |||||||||||||||||||||||| Sbjct 1172837 GCATGGCTTCATCTTTAAGACAAGCATATGACTACTGGCAG 1172877 >seq33 Length=435608 Score = 199 bits (220), Expect = 1e-48 Identities = 182/223 (82%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 285 CCCGAAGG-GCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTT 342 || ||||| | ||||||| | ||||||||||| || ||||||| || | | || | | Sbjct 296168 CCGGAAGGTGGGTTGGTTCTGTATCTAATAAACACTGCCCTTCCAGAGGAAGAGGCATGT 296109 Query 343 A-GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAA 401 |||||||||||| | |||||||||| || ||||||||||||| | || |||||||| Sbjct 296108 GCGCATGTATTAGCCATGGAATTACCACAGTCATCCATGTAGTAAAG-ACGATCAAATAC 296050 Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGAC 461 || || |||||||||| | || ||||||||| | ||||||| |||||||||||||| Sbjct 296049 ACTGTACCTGATTTAATAAACCCGTCGCAGTTTAGCCGTATAGAA-GCTTATACTTAGAC 295991 Query 462 ATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||| | |||||||||||||||||| Sbjct 295990 ATGCATGGCTTAATCTTTGAGATACGCATATGACTACTGGCAG 295948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510175539456