Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq1309 116 1e-21 seq9046 105 2e-18 >seq1309 Length=710 Score = 116 bits (128), Expect = 1e-21 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 38232 TGGATGTCGGTGAACTCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGG 38291 |||| || ||||| || ||| || | |||||| ||| |||||| |||||| ||| Sbjct 708 TGGAAGTGGGTGATTTCGTTTGGAC--GTGGCGACACACATCTGTACAGCAATCATATGG 651 Query 38292 AACAAGCGAAACTGCAGCTGACGCGCGAGCCGCGCCCGCTGCCGAAGCTTGTGCTGAAAC 38351 ||||| | | || || |||| ||||| |||||| || |||| ||||| ||| | |||| Sbjct 650 AACAAACCCAGCTACAATTGACCCGCGAACCGCGCGCGTTGCCTAAGCTGGTGATCAAAC 591 Query 38352 GGAAGCCGCCGTCTATCTTTGACTATGAATACGACGACTTTGAAATCGTCGGCTACGATC 38411 | || ||| | || | || || || | ||| || |||||||||| || ||||||| Sbjct 590 GCAAACCGGCATCGCTGTTCGATTACCGTTTCGAGGATTTTGAAATCGAAGGTTACGATC 531 Query 38412 CGCATCCGGCGATTAAAGCACCGGTGGC 38439 |||| || || || || |||||||| || Sbjct 530 CGCACCCAGCCATCAAGGCACCGGTTGC 503 >seq9046 Length=208 Score = 105 bits (116), Expect = 2e-18 Identities = 133/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 37975 CATCGACCAGATC-GCATGGGTTGTCGAAGAGATCAAACGAAATCCGCATTCACGCCGGC 38033 ||||||||||||| ||| || |||| |||||| || |||||| | || || |||| Sbjct 3 CATCGACCAGATCAGCA-ACGTGATCGAGATGATCAAGCGCAATCCGGACTCGCGGCGGC 61 Query 38034 TGCTGGTGAGCGCTTGGAATGTAGCAGAATTGGACGAGATGAAGCTGCCGCCGTGTCATT 38093 || | || ||||| |||||| || || ||||| ||||| |||||||||||| || | Sbjct 62 TGATCGTCAGCGCCTGGAATCCGGCCGAGGTGGACAAGATGGCGCTGCCGCCGTGCCACT 121 Query 38094 ACGCCTTTCAGTTCTATGTCGCCAACGGCCGGTTGTCATGCATGTGGCAGCAGCGCTCCG 38153 | || |||||||||||||||||||| ||||| ||| | | |||||||||| Sbjct 122 GCCTGTTCCAGTTCTATGTCGCCAACGGAAAATTGTCCTGCCAGCTCTATCAGCGCTCCG 181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130616945387650