Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq1309 102 1e-16 seq9463 87.8 3e-12 seq14546 86.0 1e-11 >seq1309 Length=710 Score = 102 bits (112), Expect = 1e-16 Identities = 149/208 (72%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 196891 GGGCGAGTTCGTTTGGACTGGCGGTGACGTCCACATCT--ACTCCAATCACATGGAACAG 196948 ||| || ||||||||||| | || ||| ||||||| || |||||| |||||||| Sbjct 701 GGGTGATTTCGTTTGGAC--GTGGCGACA--CACATCTGTACAGCAATCATATGGAACAA 646 Query 196949 GTAGAAGAACAGCTGTCTCGTAAACCGAAAGCGTTGCCGACGCTGGTTATCAAACGCAAA 197008 | ||| || | || ||||| |||||||| | |||||| |||||||||||| Sbjct 645 ACCCAGCTACAATTGACCCGCGAACCGCGCGCGTTGCCTAAGCTGGTGATCAAACGCAAA 586 Query 197009 CCGGACAGTATCTTCGATTACAAATTCGAAGACTTCGAACTGGTAGGCTACGATCCGCAT 197068 |||| | ||||||||| ||||| || || ||| | | ||| ||||||||||| Sbjct 585 CCGGCATCGCTGTTCGATTACCGTTTCGAGGATTTTGAAATCGAAGGTTACGATCCGCAC 526 Query 197069 CCGGCGATTAAAGCCCCGGTGGCTATTT 197096 || || || || || ||||| || |||| Sbjct 525 CCAGCCATCAAGGCACCGGTTGCCATTT 498 >seq9463 Length=439 Score = 87.8 bits (96), Expect = 3e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 ||||||||| |||||||||||| ||||||||||||| | |||||||||||||| ||||| Sbjct 152 GTAGTTCAGTTGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGCCCCGT 211 Query 3857 CAGTCCTGCCA 3867 | || | |||| Sbjct 212 CCGTTCCGCCA 222 >seq14546 Length=505 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 4206 TGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCCTGC 4265 ||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| | Sbjct 258 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 199 Query 4266 CAGGGTCGCCACATT 4280 ||| | |||| ||| Sbjct 198 CAGAGGAGCCATATT 184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771399076354920