Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_031940.1 Length=77375 Score E Sequences producing significant alignments: (Bits) Value seq14555 107 9e-19 seq383 84.2 1e-11 >seq14555 Length=438 Score = 107 bits (118), Expect = 9e-19 Identities = 210/307 (68%), Gaps = 4/307 (1%) Strand=Plus/Plus Query 35723 ATGTTTATCGCTCAGGTAGGCCATGAGTCGATGG-GGTTTAGCGCCGT-AGTTGAAAATT 35780 |||||||| || ||||| || |||||||| ||| || || | | | || ||||| Sbjct 8 ATGTTTATTGCACAGGTTGGACATGAGTC--TGGCGGATTCACCCGGACAGCGGAAAACC 65 Query 35781 TTAACTACACGCCATCTGCGCTGGTGGCGACGTTCGGAAAGAGGATCACACAGCAGCAGG 35840 | || |||||||| | ||| |||| || || |||||| | || || | ||| Sbjct 66 TGAATTACACGCCGCAAGGCCTGCTGGCTACATTTGGAAAGCGCATTACGGTTTATCAGT 125 Query 35841 CTGATGCCCTTGGCAGAACATCCGGACATGCAGCTCGTCAGGATGCTATTGCCAATCTGG 35900 | ||| || ||| | || | | || |||| |||||| ||||| |||||||||| Sbjct 126 CGGATATGCTGGGCCGCACGGCTGCGCACCCAGCCAATCAGGAAGCTATCGCCAATCTGG 185 Query 35901 TGTATAGCAACCGGCTGGGTAACAAAGCACCCGGTGATGGCTGGAAATATCGTGGTAGAG 35960 | || | | || ||||| |||||| ||| |||||| || ||||||||||| || | | Sbjct 186 TATACGCCGATCGCCTGGGCAACAAATCACGCGGTGACGGGTGGAAATATCGCGGCCGTG 245 Query 35961 GATTAATTCAAATCACTGGCCTCCATAATTATCGCATCTGTGGCGCGGCGCTGAAGTTAG 36020 || | ||||| || || || | ||||||| || || || | ||| ||||| | | Sbjct 246 GACTGATTCAGATTACCGGTCAGGATAATTACCGGGCATGCGGTACCGCGTTGAAGCTTG 305 Query 36021 ATCTGGT 36027 | ||||| Sbjct 306 ACCTGGT 312 Score = 107 bits (118), Expect = 9e-19 Identities = 210/307 (68%), Gaps = 4/307 (1%) Strand=Plus/Plus Query 75186 ATGTTTATCGCTCAGGTAGGCCATGAGTCGATGG-GGTTTAGCGCCGT-AGTTGAAAATT 75243 |||||||| || ||||| || |||||||| ||| || || | | | || ||||| Sbjct 8 ATGTTTATTGCACAGGTTGGACATGAGTC--TGGCGGATTCACCCGGACAGCGGAAAACC 65 Query 75244 TTAACTACACGCCATCTGCGCTGGTGGCGACGTTCGGAAAGAGGATCACACAGCAGCAGG 75303 | || |||||||| | ||| |||| || || |||||| | || || | ||| Sbjct 66 TGAATTACACGCCGCAAGGCCTGCTGGCTACATTTGGAAAGCGCATTACGGTTTATCAGT 125 Query 75304 CTGATGCCCTTGGCAGAACATCCGGACATGCAGCTCGTCAGGATGCTATTGCCAATCTGG 75363 | ||| || ||| | || | | || |||| |||||| ||||| |||||||||| Sbjct 126 CGGATATGCTGGGCCGCACGGCTGCGCACCCAGCCAATCAGGAAGCTATCGCCAATCTGG 185 Query 75364 TGTATAGCAACCGGCTGGGTAACAAAGCACCCGGTGATGGCTGGAAATATCGTGGTAGAG 75423 | || | | || ||||| |||||| ||| |||||| || ||||||||||| || | | Sbjct 186 TATACGCCGATCGCCTGGGCAACAAATCACGCGGTGACGGGTGGAAATATCGCGGCCGTG 245 Query 75424 GATTAATTCAAATCACTGGCCTCCATAATTATCGCATCTGTGGCGCGGCGCTGAAGTTAG 75483 || | ||||| || || || | ||||||| || || || | ||| ||||| | | Sbjct 246 GACTGATTCAGATTACCGGTCAGGATAATTACCGGGCATGCGGTACCGCGTTGAAGCTTG 305 Query 75484 ATCTGGT 75490 | ||||| Sbjct 306 ACCTGGT 312 >seq383 Length=569 Score = 84.2 bits (92), Expect = 1e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 65484 GCGACTCATCCGGTCATTCGTATGCCACCGGCGGCTACTTCGTGGGCGTCCTGCCTGTTC 65543 |||| |||||| | ||||| |||| | ||||||||||||||||||||||||||||||| Sbjct 210 GCGAATCATCCCGATCTTCGTGTGCCTCGGGCGGCTACTTCGTGGGCGTCCTGCCTGTTC 151 Query 65544 GCTGCT 65549 |||||| Sbjct 150 GCTGCT 145 Score = 84.2 bits (92), Expect = 1e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 25896 GCGACTCATCCGGTCATTCGTATGCCACCGGCGGCTACTTCGTGGGCGTCCTGCCTGTTC 25955 |||| |||||| | ||||| |||| | ||||||||||||||||||||||||||||||| Sbjct 210 GCGAATCATCCCGATCTTCGTGTGCCTCGGGCGGCTACTTCGTGGGCGTCCTGCCTGTTC 151 Query 25956 GCTGCT 25961 |||||| Sbjct 150 GCTGCT 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247430377678456