Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq637 228 3e-57 >seq637 Length=5243 Score = 228 bits (252), Expect = 3e-57 Identities = 240/311 (77%), Gaps = 11/311 (4%) Strand=Plus/Minus Query 382 GATGCTGGCGTAAT-GGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACA 440 ||||||||| |||| |||| || || ||||||||| ||||||||||||||||||||||| Sbjct 2024 GATGCTGGCTTAATCGGTTCCAACCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACA 1965 Query 441 TCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAA 500 | | ||||||| | |||| | | || || ||| ||||||||||| | ||| | || Sbjct 1964 TATGTGCGAGTATGCGGGTTTTACTCCTGTATGCGCAATGAAAGTGAGAGTAGG-GAGAT 1906 Query 501 CCCG----TGAGGGT----GCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGT 552 | || | ||||| ||||||| | ||| ||| | || ||||||| Sbjct 1905 TTTGGCTTTGCCATTCTTCGCACCTACGACCGACCACGATCTCTGAGAGAGG-TTTGAGT 1847 Query 553 AAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG 612 ||||||| ||||| ||||||||||||||||||||||||||||| ||| ||||| ||| Sbjct 1846 TGGAGCATATCTGTTAGGACCCGAAAGATGGTGAACTATGCCTGAGTAGAATGAAGTCAG 1787 Query 613 AGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGG 672 |||||| ||| |||||| ||| |||| | ||| ||||||||||| |||||||| ||||| Sbjct 1786 GGGAAACCCTGATGGAGGTTCGTAGCGATACTGACGTGCAAATCGTTCGTCAAACTTGGG 1727 Query 673 TATAGGGGCGA 683 ||||||||||| Sbjct 1726 TATAGGGGCGA 1716 Score = 134 bits (148), Expect = 6e-29 Identities = 129/164 (79%), Gaps = 1/164 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| | |||| | ||| | ||||| | |||| |||| ||||||||| | Sbjct 2445 GAGTCGCGTTCATCGGGATTTGAGCGCAAAATGTGTGGTAGGTTTCACATAAAGCTAAGT 2386 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| |||||||||||| ||||||| |||| ||||||||||||| |||||||| Sbjct 2385 ACTGGCGCGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGTTCTTTGGAA 2326 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTG 203 |||||||| ||||| | |||||||| ||||| ||||||| ||| Sbjct 2325 AGAGAGTT-AAAAGTGCCTGAAATTGCTGAAAAGGAAGCGATTG 2283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079220078000