Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq1858 93.3 1e-16 seq4118 84.2 7e-14 seq2350 82.4 2e-13 >seq1858 Length=14663 Score = 93.3 bits (102), Expect = 1e-16 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 ||||||| |||||||||||||||||||||||| | || |||||||||||||||||| || Sbjct 66 CGCAAGGGTGAAACTCAAAGGAATTGACGGGGGCTCGTACAAGCGGTGGAGCATGTAATT 7 Query 67 TAATTC 72 |||||| Sbjct 6 TAATTC 1 >seq4118 Length=6059 Score = 84.2 bits (92), Expect = 7e-14 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 8 GCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTT 67 |||||| ||||| || ||||||||||||||| | || |||||||||||||||||| ||| Sbjct 2876 GCAAGGGTGAAAGTCGAAGGAATTGACGGGGGCTCGTACAAGCGGTGGAGCATGTAATTT 2935 Query 68 AATTCG 73 |||||| Sbjct 2936 AATTCG 2941 >seq2350 Length=14394 Score = 82.4 bits (90), Expect = 2e-13 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 ||||||| ||| ||||||||||||||||||| | || | ||||||||||||| || || Sbjct 7351 CGCAAGGGCGAACCTCAAAGGAATTGACGGGGGCTCGTAGAAGCGGTGGAGCAAGTAATT 7410 Query 67 TAATTCGAAGCAACGCGA 84 |||||||| | | ||||| Sbjct 7411 TAATTCGATGAATCGCGA 7428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503453145600