Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq35981 354 1e-95 seq34090 73.4 7e-11 >seq35981 Length=2866 Score = 354 bits (392), Expect = 1e-95 Identities = 237/264 (90%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2389 GTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 2448 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 ||| | ||||||||||||| || ||| || |||||| || |||||||||||||||| Sbjct 2449 ATTGGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCTCAATGATAGGAAGAGCCG 2508 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2509 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 2568 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 |||||||||||||||||| |||||||||| || |||| | ||||||||||||||| Sbjct 2569 CCTGTGGTAACTTTTCTGACACCTCTAGCTGAAAGTTTCTCAGACCTAAAGGATCGATAG 2628 Query 270 GCCACACTTTCATGGTTTGTATTC 293 |||| |||||| |||||||||| Sbjct 2629 GCCATGCTTTCACAGTTTGTATTC 2652 >seq34090 Length=610 Score = 73.4 bits (80), Expect = 7e-11 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||||||| || ||| |||| ||||| ||||| Sbjct 403 CTGTCTCACGACGTTCTGAACCCAGCTCACGTGCCGCTTTAATGGGCGAACAGACCAACC 462 Query 113 CTTACCGAATTCTGCTTCGG---TATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| || ||||| | | | ||| || ||||||||||||| | |||| | Sbjct 463 CTT---GAGACCTGCTACAGCCTCAGGATGCGACGAGCCGACATCGAGGTGCCAAACCTC 519 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 |||| |||| || | || | | |||| ||||||||| ||||||||| Sbjct 520 CCCGTCAATATGGACTATCGGGAGAGATCAGCCTGTTATCCCTAGAGTAACTTTT 574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854089340160