Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq34090 183 5e-44 seq1939 138 2e-30 seq40 107 3e-21 seq7303 96.9 5e-18 >seq34090 Length=610 Score = 183 bits (202), Expect = 5e-44 Identities = 144/169 (85%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 109 GGTCCTCTCGTACT-AAGGACAGCTCCTCT-CAAATTTCCTACGCCCACGACGGATAGGG 166 |||||||||||||| ||||| | | || | ||| ||| |||| || |||||| || Sbjct 339 GGTCCTCTCGTACTAAAGGAAA--TACTTTACAATATTCTTACGTTTACATCGGATACGG 396 Query 167 ACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGC 226 ||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 397 ACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTGCCGCTTTAATGGGCGAACAGA 456 Query 227 CCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||| ||||| || ||||| ||||||| ||||||||||||||| Sbjct 457 CCAACCCTTGAGACCTGCTACAGCCTCAGGATGCGACGAGCCGACATCG 505 >seq1939 Length=4104 Score = 138 bits (152), Expect = 2e-30 Identities = 93/104 (89%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 165 GGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACA 224 ||||||||||||||| ||||||||||||||||| || |||||| |||||||||||||||| Sbjct 173 GGACCGAACTGTCTCACGACGTTCTGAACCCAGTTCACGTGCCGCTTTAATGGGCGAACA 114 Query 225 GCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCC 268 | |||||||||| ||| | || ||||| ||||||| |||||||| Sbjct 113 GACCAACCCTTGAGACATGCTACAGCCTCAGGATGTGACGAGCC 70 >seq40 Length=11046 Score = 107 bits (118), Expect = 3e-21 Identities = 74/84 (88%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 192 ACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCC 251 ||||||||| |||||| ||||||||||||||||| |||||||||| |||| || ||||| Sbjct 697 ACCCAGCTCACGTGCCGCTTTAATGGGCGAACAGACCAACCCTTGAGACCCGCTACAGCC 638 Query 252 CCAGGATGAGACGAGCCGACATCG 275 ||||||| ||||||||||| ||| Sbjct 637 TCAGGATGCGACGAGCCGACGTCG 614 >seq7303 Length=1435 Score = 96.9 bits (106), Expect = 5e-18 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 185 GTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTAC 244 |||||||||||||||| |||||| ||||||||||||||||| ||| |||||| ||||| | Sbjct 1363 GTTCTGAACCCAGCTCACGTGCCGCTTTAATGGGCGAACAGACCATCCCTTGAGACCTGC 1422 Query 245 TTCAGCCCCAGGA 257 | ||||| ||||| Sbjct 1423 TACAGCCTCAGGA 1435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780524972960