Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq637 549 6e-154 seq35981 127 7e-27 >seq637 Length=5243 Score = 549 bits (608), Expect = 6e-154 Identities = 335/355 (94%), Gaps = 3/355 (1%) Strand=Plus/Plus Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACT 244 || ||||||||| || |||| ||||||||||||||| |||||||| ||||||||| Sbjct 88 GAATAAGTAAAACGACATTAAGAGTAGTGGTATTTCACGAGCGCCGAA---GCTCCCACT 144 Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 145 TATGCTACACCTCCTAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 204 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 205 TCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 264 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 265 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 324 Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 325 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGATTGAATTT 384 Query 485 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTT 539 | |||| |||||||||||||||||||||||||||||||||||||||||| || || Sbjct 385 CATCACATTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCAGTT 439 >seq35981 Length=2866 Score = 127 bits (140), Expect = 7e-27 Identities = 94/110 (85%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| |||||||||||||||| ||| Sbjct 2686 CTTTTGGTCAACATGAGATTTCTGTTCTCATTGAGCTTGCCTTAGGACACCTGCGCTATT 2745 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116 |||| |||||||||||||||||||||||||||| ||||||| |||| || Sbjct 2746 GTTTCACAGATGTGCCGCCCCAGCCAAACTCCCAACCTGACTGTGTCTTC 2795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634605441280