Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq637 307 3e-81 seq4863 199 1e-48 >seq637 Length=5243 Score = 307 bits (340), Expect = 3e-81 Identities = 263/318 (83%), Gaps = 5/318 (2%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| ||||||||||||||| | || |||||||||||||||||||||||||||||||| Sbjct 4923 TATTTCTTGTCACTACCTCCCTGAATCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 4982 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4983 TTAGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 5042 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 ||||| | ||| ||||| ||| || |||| ||||||| ||||||| |||||| ||| Sbjct 5043 CCCGTCACTGCCACGGTAGTCCAATACAGTACCGTCGAAAGCTGATAGGTCAGAAACTTG 5102 Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACC-AAGG 281 ||||| || |||| | | ||| | | ||||| |||| |||| ||||||||||| ||| Sbjct 5103 AATGATCCGTCGCAGACCGAAGTCAACGCGATCCGTTCGGTTACTATGAATCACCTGAGG 5162 Query 282 AGC-CCCGAAGG-GCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCG-GGG 337 | | || ||||| | ||||||| | ||||||||||| || ||||||| || | | || Sbjct 5163 ACCACCGGAAGGTGGGTTGGTTCTGTATCTAATAAACACTGCCCTTCCAGAGGAAGAGGC 5222 Query 338 TTTTTAGCATGTATTAGC 355 | | |||||||||||| Sbjct 5223 ATGTGCGCATGTATTAGC 5240 >seq4863 Length=5905 Score = 199 bits (220), Expect = 1e-48 Identities = 182/223 (82%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 285 CCCGAAGG-GCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTT 342 || ||||| | ||||||| | ||||||||||| || ||||||| || | | || | | Sbjct 2513 CCGGAAGGTGGGTTGGTTCTGTATCTAATAAACACTGCCCTTCCAGAGGAAGAGGCATGT 2454 Query 343 A-GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAA 401 |||||||||||| | |||||||||| || ||||||||||||| | || |||||||| Sbjct 2453 GCGCATGTATTAGCCATGGAATTACCACAGTCATCCATGTAGTAAAG-ACGATCAAATAC 2395 Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGAC 461 || || |||||||||| | || ||||||||| | ||||||| |||||||||||||| Sbjct 2394 ACTGTACCTGATTTAATAAACCCGTCGCAGTTTAGCCGTATAGAA-GCTTATACTTAGAC 2336 Query 462 ATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||| | |||||||||||||||||| Sbjct 2335 ATGCATGGCTTAATCTTTGAGATACGCATATGACTACTGGCAG 2293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509850818560