Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq12278 183 2e-41 seq36021 159 3e-34 >seq12278 Length=2500 Score = 183 bits (202), Expect = 2e-41 Identities = 413/610 (68%), Gaps = 22/610 (4%) Strand=Plus/Plus Query 65711 CAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGT 65770 || |||| |||||| ||||| || || || |||||| ||| || || | | || Sbjct 1758 CAACTGGCCTCGAGAGCGGCGAAGTAGATACACTCGAAGATGTTTCTGTTCAAGACGCGA 1817 Query 65771 GCCTCATCGCTCTCGTACGGCATACCCATCAGG-ACAAAAGTGTCGGCCAGACCTTGAAC 65829 || || ||| ||| |||| ||| | | | | | || | ||| || ||||| || || Sbjct 1818 GCTTCGGGGCTGTCGAACGG-ATAGCGAAGAAGCATGAAGGCGTCTGCGAGACCCTGGAC 1876 Query 65830 TCCAATACCGATGGGACGATGACGCAAATTGGAACGTCT-CGCCTCAGGTACAGGGTAGT 65888 ||| | ||||| || || || ||||| ||| | ||| ||| || || |||||||||| Sbjct 1877 TCCCAAACCGACAGGTCGGTGTCGCAAGTTGCT-CTTCTTCGCTTCGGGCACAGGGTAGT 1935 Query 65889 AATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATT 65948 | || |||||| | ||| ||||| || | |||| || | ||||| || ||| | Sbjct 1936 AGTTTCGATCGATCACGCGGTTCAAGTTTCTCGTCATGACTTTGACGATTCGCTTCAAGT 1995 Query 65949 GTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGG 66008 ||||||| || ||| | | | ||| | || |||| |||||||| || | Sbjct 1996 GTTCGAAGTCGAAAG---TCCGGCTCTCGCG-GT--------CCACGAACTTGGGCAGCG 2043 Query 66009 CAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGG 66068 | || || | |||||||||||| | |||||| || |||||||| | ||| | Sbjct 2044 AGACGGAGGCCAAGTTGCAGACAGCCACCTCGTCTTTGCTCGTGTACTCGACGACTTCTG 2103 Query 66069 TGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATG 66128 |||||| || ||||| || || ||||| |||| || || ||||| |||||||| | Sbjct 2104 TGCACAAGTTGCTGCATTTGATAGTTCCCAAGTTCTTCTGGTTGCTCTTCCGATTGCAAG 2163 Query 66129 CATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCC 66188 | || ||||||| ||||||||| ||||| ||||| | ||| | || | || || || Sbjct 2164 CGTCTTTGTACAGCATGTACGGCGTGCCCGTCTCGATTTGCGCCTGGAGAATCGCAAACC 2223 Query 66189 AAAGAGCGC-GTGCCTTCACCGTACGTACCG--CCCTACCTTTGCGTTCGTAATGTTCGT 66245 |||| | || | || | ||| | ||| ||| ||||| ||||||||| | |||| Sbjct 2224 AAAG-GTGCTGAGCTGGAATCGT--CTTCCGACCCCGACCTTCGCGTTCGTAGCGCTCGT 2280 Query 66246 AGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACA 66305 | | | || ||| || ||||| || || | || || || |||| || ||||||| Sbjct 2281 ACAACTCTTTGAATTCGTCGCCCCACACCTCCGTCAAACCCGGGCACTCGTTGGGACACA 2340 Query 66306 TCAGCGACCA 66315 |||||| ||| Sbjct 2341 TCAGCGTCCA 2350 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 65074 CGAATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCC 65133 ||||||||| ||||||| |||||| | || ||||||| |||| || ||||| | || Sbjct 235 CGAATCGACAGTGAACTTGATCGCGTCCGCTGCCGCCTGCGTCCGCAGGTAGTAGAGACC 294 Query 65134 GGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGG 65193 || || |||||| | | ||| | || || ||||| | || | || || || |||| Sbjct 295 AGTTTTCAGGCCACCTCTCCAGCCGTAAAAGTGCATAGTAGAGAGCTTCGCGTAGGTCGG 354 Query 65194 CTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGC 65253 | | ||| || || |||| ||| ||| ||| |||||| | | | ||||| || Sbjct 355 GTTGACCATGTGGATGTTCAGCGAGTGAGACTGGTCGATGAAGGGTGCCCGATCGATCGC 414 Query 65254 CATGTCAATGATACGACGTCCCGAT--ATCTCCCAGACGGTCTTGTACAG 65301 | || | || ||||| | | | |||||||| || ||||||||||| Sbjct 415 GAGATCGAGGA--CGACGCGCTGTTTGATCTCCCAAACAGTCTTGTACAG 462 >seq36021 Length=4195 Score = 159 bits (176), Expect = 3e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || ||||| || ||||||||||| ||||||| ||||| || ||| ||||||| | Sbjct 3966 CATGAAGAGATCTGGGATCCAGAGGGCACAGAAGAGGTCGCGAGCACGTCGCTCCTCCTT 3907 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 |||||| || || | ||||||||| || |||| || |||||||| |||| ||| Sbjct 3906 GCCGTGGTTCTTTTTGATGTCGAGGAAATCGAAGACATCAAAGTGCCATGGCTCCAAGTA 3847 Query 66460 GATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTT 66519 ||||||| ||| | ||||||||||| || |||||||||||||| ||| ||| ||| Sbjct 3846 AATGGCGAGGCTGCCTTTGCGTTTGCCGCCGCCCTGGTCGACGTAGCGCGCGGCATCGTT 3787 Query 66520 GAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 |||||| | | |||||| | || || || || | |||||| || || Sbjct 3786 GAAGACTCTGAGCATCGGGAGAAGACCATTCGAGTAGCCATTCGTTCC 3739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397391822710400