Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq21362 78.8 3e-12 seq20087 78.8 3e-12 seq20084 78.8 3e-12 >seq21362 Length=18389 Score = 78.8 bits (86), Expect = 3e-12 Identities = 116/165 (70%), Gaps = 11/165 (7%) Strand=Plus/Plus Query 142 ACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTA 201 || ||||| ||||| |||||||||||||||| || |||||| |||||||||||||| Sbjct 5640 ACTTAAATAATTTTCGCAGAGAACCAGCTATCACTAATCTTGATTAGCCTTTCACCCCTA 5699 Query 202 TCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTAC 261 ||| ||||||| | ||| |||| | |||||| |||||| || ||| Sbjct 5700 ATTACAAATCATCCCAGAATTTTGCAACATTCACGGGTTCAGTCCTC------GTTATAC 5753 Query 262 CCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCT 306 |||| || || ||| |||||| || ||||||||||| Sbjct 5754 -----CTTCGACTTGTTCATAATTAGATCGATTAGCTTCGGGTCT 5793 Score = 78.8 bits (86), Expect = 3e-12 Identities = 116/165 (70%), Gaps = 11/165 (7%) Strand=Plus/Minus Query 142 ACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTA 201 || ||||| ||||| |||||||||||||||| || |||||| |||||||||||||| Sbjct 8445 ACTTAAATAATTTTCGCAGAGAACCAGCTATCACTAATCTTGATTAGCCTTTCACCCCTA 8386 Query 202 TCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTAC 261 ||| ||||||| | ||| |||| | |||||| |||||| || ||| Sbjct 8385 ATTACAAATCATCCCAGAATTTTGCAACATTCACGGGTTCAGTCCTC------GTTATAC 8332 Query 262 CCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCT 306 |||| || || ||| |||||| || ||||||||||| Sbjct 8331 -----CTTCGACTTGTTCATAATTAGATCGATTAGCTTCGGGTCT 8292 >seq20087 Length=24856 Score = 78.8 bits (86), Expect = 3e-12 Identities = 116/165 (70%), Gaps = 11/165 (7%) Strand=Plus/Plus Query 142 ACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTA 201 || ||||| ||||| |||||||||||||||| || |||||| |||||||||||||| Sbjct 5640 ACTTAAATAATTTTCGCAGAGAACCAGCTATCACTAATCTTGATTAGCCTTTCACCCCTA 5699 Query 202 TCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTAC 261 ||| ||||||| | ||| |||| | |||||| |||||| || ||| Sbjct 5700 ATTACAAATCATCCCAGAATTTTGCAACATTCACGGGTTCAGTCCTC------GTTATAC 5753 Query 262 CCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCT 306 |||| || || ||| |||||| || ||||||||||| Sbjct 5754 -----CTTCGACTTGTTCATAATTAGATCGATTAGCTTCGGGTCT 5793 >seq20084 Length=29161 Score = 78.8 bits (86), Expect = 3e-12 Identities = 116/165 (70%), Gaps = 11/165 (7%) Strand=Plus/Plus Query 142 ACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTA 201 || ||||| ||||| |||||||||||||||| || |||||| |||||||||||||| Sbjct 9945 ACTTAAATAATTTTCGCAGAGAACCAGCTATCACTAATCTTGATTAGCCTTTCACCCCTA 10004 Query 202 TCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTAC 261 ||| ||||||| | ||| |||| | |||||| |||||| || ||| Sbjct 10005 ATTACAAATCATCCCAGAATTTTGCAACATTCACGGGTTCAGTCCTC------GTTATAC 10058 Query 262 CCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCT 306 |||| || || ||| |||||| || ||||||||||| Sbjct 10059 -----CTTCGACTTGTTCATAATTAGATCGATTAGCTTCGGGTCT 10098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817211342592