Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq20934 159 5e-37 seq21362 114 2e-23 seq20087 114 2e-23 seq20084 114 2e-23 >seq20934 Length=584 Score = 159 bits (176), Expect = 5e-37 Identities = 142/178 (80%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| | | |||| ||||||||| |||||| |||||| | |||| || ||||| ||||| Sbjct 180 GAGGCGAGTTTCGCACTTAGATGCTTTCAGCGCTTATCTCATCCACACATAGCTACCCAG 121 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | |||| |||| ||||||||| ||| || ||| ||||| | |||||||||||||| Sbjct 120 CGATGCCTCTGGCGAAACAACTGGTACACTAGCGGTGTGTCCGACTCGGTCCTCTCGTAC 61 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTC 179 || | |||| || ||||| |||| |||||||| || |||||||||||||||||||| Sbjct 60 TAGAGTCAGCACCCCTCAATTTTCTAACGCCCACAACAGATAGGGACCGAACTGTCTC 3 >seq21362 Length=18389 Score = 114 bits (126), Expect = 2e-23 Identities = 131/175 (75%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 101 TCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGG 160 || ||| |||||||||||||||| | || || || | ||| ||| | | | Sbjct 3987 TCTATCTCGGTCCTCTCGTACTAGAGCAAGGTC-TCATTATTTTTCTAATTTATCAGCAG 4045 Query 161 ATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCG 220 ||||||||||||||||||| ||||||||| |||||||||| ||| || ||||| || | Sbjct 4046 ATAGGGACCGAACTGTCTCACGACGTTCTAAACCCAGCTCACGTACCATTTTAACGGTAG 4105 Query 221 AACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||| || |||||||| | | |||| ||||||| || |||||||||||| Sbjct 4106 AACAGACCGACCCTTGGAAGATTATTCACAACCAGGATATGATGAGCCGACATCG 4160 Score = 114 bits (126), Expect = 2e-23 Identities = 131/175 (75%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 101 TCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGG 160 || ||| |||||||||||||||| | || || || | ||| ||| | | | Sbjct 10098 TCTATCTCGGTCCTCTCGTACTAGAGCAAGGTC-TCATTATTTTTCTAATTTATCAGCAG 10040 Query 161 ATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCG 220 ||||||||||||||||||| ||||||||| |||||||||| ||| || ||||| || | Sbjct 10039 ATAGGGACCGAACTGTCTCACGACGTTCTAAACCCAGCTCACGTACCATTTTAACGGTAG 9980 Query 221 AACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||| || |||||||| | | |||| ||||||| || |||||||||||| Sbjct 9979 AACAGACCGACCCTTGGAAGATTATTCACAACCAGGATATGATGAGCCGACATCG 9925 >seq20087 Length=24856 Score = 114 bits (126), Expect = 2e-23 Identities = 131/175 (75%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 101 TCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGG 160 || ||| |||||||||||||||| | || || || | ||| ||| | | | Sbjct 3987 TCTATCTCGGTCCTCTCGTACTAGAGCAAGGTC-TCATTATTTTTCTAATTTATCAGCAG 4045 Query 161 ATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCG 220 ||||||||||||||||||| ||||||||| |||||||||| ||| || ||||| || | Sbjct 4046 ATAGGGACCGAACTGTCTCACGACGTTCTAAACCCAGCTCACGTACCATTTTAACGGTAG 4105 Query 221 AACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||| || |||||||| | | |||| ||||||| || |||||||||||| Sbjct 4106 AACAGACCGACCCTTGGAAGATTATTCACAACCAGGATATGATGAGCCGACATCG 4160 >seq20084 Length=29161 Score = 114 bits (126), Expect = 2e-23 Identities = 131/175 (75%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 101 TCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGG 160 || ||| |||||||||||||||| | || || || | ||| ||| | | | Sbjct 8292 TCTATCTCGGTCCTCTCGTACTAGAGCAAGGTC-TCATTATTTTTCTAATTTATCAGCAG 8350 Query 161 ATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCG 220 ||||||||||||||||||| ||||||||| |||||||||| ||| || ||||| || | Sbjct 8351 ATAGGGACCGAACTGTCTCACGACGTTCTAAACCCAGCTCACGTACCATTTTAACGGTAG 8410 Query 221 AACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||| || |||||||| | | |||| ||||||| || |||||||||||| Sbjct 8411 AACAGACCGACCCTTGGAAGATTATTCACAACCAGGATATGATGAGCCGACATCG 8465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780638258988