Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq6928 145 6e-30 seq14392 123 2e-23 seq1421 114 1e-20 >seq6928 Length=2931 Score = 145 bits (160), Expect = 6e-30 Identities = 335/502 (67%), Gaps = 2/502 (0%) Strand=Plus/Plus Query 66004 AAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAAT 66063 ||| |||| ||||| | |||||| || ||||| ||||| ||| ||| ||||| || || Sbjct 1327 AAGTGCAATGGATGCCAAGTTGCAAACTGCTATTTCGTCGGGACTGGTGTACTCCACTAT 1386 Query 66064 TTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATT 66123 ||| || || ||||| || ||||| || | || | ||| || ||| | ||| Sbjct 1387 TTCAGTACAGAGATTGGAGCTCTTAATGGTTCCTAGGTTTTATTGGTTTGACTTTCTATT 1446 Query 66124 GCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGC 66183 ||| | ||| ||||| | |||||| || || || || || | | || || | ||| Sbjct 1447 GCAGGTATCTTTGTAGAGCATGTAGGGGGTTCCAGTTTCTATCTAAGATTCTACGATTTG 1506 Query 66184 GTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATGTT 66242 ||| || | |||||| | | || | | || || || | | ||| || | | Sbjct 1507 ACTCCAGAGCCATCTTGCCTTAATGG-ACTTTCTACCTCTTCCATCTCTTTCATATTACT 1565 Query 66243 CGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGAC 66302 | ||||||| ||| || | ||||| | || || ||| || | || |||| Sbjct 1566 CATAGAGGTTTTCAAACTCCTATCCCCAGCAATTACTCAAACCTGGGCATTCGTTGGGAC 1625 Query 66303 ACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGA 66362 ||||||| | ||| || ||| || || || | ||| || ||||| |||||||| | Sbjct 1626 ACATCAGGGTCCAGTCTTCATTCTTCTCGACTCTTTTCATGAAAAGATCTGGTATCCAAA 1685 Query 66363 GGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGA 66422 | ||||| |||||||| | |||| | ||||| | || ||||| || | || | || Sbjct 1686 GTGCGTAAAAGAGATCTCTGGCTCTGTTTTCCTCCTTACCATGATTCTTTCTCAGTTAGA 1745 Query 66423 GGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTT 66482 |||| ||| |||| || || |||||||| |||| |||| || |||| ||| | | || Sbjct 1746 GGAAGTCATAGATATCTGCGTGCCATGGCTCCACATAGACAGCAAACGCTCCCTTTCTTT 1805 Query 66483 TGCCGCCACCTTGGTCGACGTA 66504 | || |||||||| || || || Sbjct 1806 TACCACCACCTTGATCAACATA 1827 >seq14392 Length=2979 Score = 123 bits (136), Expect = 2e-23 Identities = 368/563 (65%), Gaps = 6/563 (1%) Strand=Plus/Plus Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073 || ||||||||||| ||||||| || ||||| | || || || | |||||| || Sbjct 1311 GAGGCGAGGTTGCAAACAGCTACTTCATCAGGTGAAGTGTATTCAATGATTTCGCAACAG 1370 Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGC-GATTGCATGCATC 66132 |||||| | ||||| || | ||| | |||||| || | |||| || || Sbjct 1371 AGATTAGAACTCTTAATGGTACCGAGATTTTTTTGATTGGATTTATTGTTTGCGTGG-TC 1429 Query 66133 CTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAG 66192 |||||| | ||| || ||||| ||||| |||| || ||||| || | | |||||| Sbjct 1430 CTTGTAAAGCATATAGGGAGTACCGGTTTCAATTTAACTTTCAATAATAGTCTCCCAAAG 1489 Query 66193 AGCGCGTGCCTTCACCGTACGTACCGCCC--TACCTTTGCGTTCGTAATGTTCGTAGAGG 66250 || || | || | ||||| |||||| || ||| || | ||| || Sbjct 1490 TTTCATGGCTTTTATGGTCTTT--CGCCCAATACCTTAGCTTTCATATTTAGTGTAAAGA 1547 Query 66251 TGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGC 66310 |||||||| ||||| | || || | || | | | | || || | || Sbjct 1548 GCTTCGAAGGCATCACCATAGACATCATAGAGTCCCTTAGCTTCATTAGGGCAGAAGAGT 1607 Query 66311 GACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAG 66370 | ||||||||| | | | || | |||||||||||| || ||||| ||||| ||| Sbjct 1608 GTCCAATCACCGTTATCTCTGACTCTCTTCATAAATAGATCTGGGATCCAAAGGGCATAG 1667 Query 66371 AAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCA 66430 || ||||| | |||| || || || | |||||||| || | | ||||| ||| Sbjct 1668 AAAAGATCTCTAGCTCTTTATTCTTCCTTACCGTGATTCTTTTTTAGTTGAAGGAAATCA 1727 Query 66431 AAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCA 66490 || | || || ||||||||||| || ||||| ||||| || ||| | | || || ||| Sbjct 1728 AAAACATCTGCGTGCCATGGTTCAAGATAGATAGCGAATGAACCCTTTCTCTTTCCACCA 1787 Query 66491 CCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTA 66550 |||||||| ||||| | ||| | ||||| || | | ||| || || || || || Sbjct 1788 CCTTGGTCAACGTATCTAGCAGTTTCATTGAATACTCTAAGCATGGGGACAAGACCATTG 1847 Query 66551 GATTTGCCATTGGTGCCGTCGAT 66573 || | ||||| || || | ||| Sbjct 1848 GAGTGTCCATTAGTACCCTTGAT 1870 >seq1421 Length=1529 Score = 114 bits (126), Expect = 1e-20 Identities = 580/912 (64%), Gaps = 18/912 (2%) Strand=Plus/Plus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| |||||| ||||||| ||| | || || | || || ||| | ||| | ||| Sbjct 423 GAACCACTATTGGAAGAGAACCCTAACAGATTTGTGATCTTGCCAATCAAATATAATGAT 482 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || ||| ||||||||| | || | |||||||| ||||| ||||| | Sbjct 483 ATCTGGAAAATGTACAAAGATTAAATGGCAGCATTCTGGACATCAGAGGAAATCGATCTT 542 Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTT-ATCGAGCGGTGAACAACATTTCATTAAACA 61205 ||| ||| | || ||||||||| | | | ||| | || ||| ||||| ||||| Sbjct 543 GCCACAGATGTTAAAGACTGGGAGAGACTCAACGA-CAACGAGAGACACTTCATCAAACA 601 Query 61206 TGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTT 61265 || | || || || || ||||| |||||||| || |||||||| || || | || Sbjct 602 CGTTCTCGCCTTTTTCGCTGCTTCTGACGGTATTGTAAATGAGAACCTAGCCTAAAGATT 661 Query 61266 CGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGG 61324 | ||| || | || || | || || | ||||||||||| ||| |||| |||| Sbjct 662 CT-GCACTGAAATTCAGGTTCCAGAAGCTAGATGTTTCTACGGATTCTAGATGATGATGG 720 Query 61325 AGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC-G 61383 | || ||||||| || | ||| |||| || ||||| | || || || || | Sbjct 721 AAAACATCCACTCTGAAACCTACTCCCTTCTAATTGATACTTTGATTAGTGA-CGCTCAA 779 Query 61384 GAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGAT 61443 ||| ||| || ||||| ||| || | | || || | || | || || || Sbjct 780 GAAAAAGAATATTTATTCAAAGCCGTCTAAAATATCCCAGTTGTCACTAAAAAGGCAGAA 839 Query 61444 TGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTT 61503 ||||| || | ||||| || ||| |||| || | |||| | | | || || Sbjct 840 TGGGCATTGAGATGGAT---TGGTGAAACAGCTAGCTTCGCTGAAAGGCTAGTTGCTTTC 896 Query 61504 GCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAA 61563 || || |||||| |||| || ||| || || |||| || ||| | |||||| Sbjct 897 GCTTCAGTTGAGGGTATATTCTTTTCTGGCTCTTTCTGTTCAATTTTCTGGCTCAAGAAA 956 Query 61564 CGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATG 61623 |||||||| ||||| || || |||||| |||||| | || || | || || || ||| Sbjct 957 CGTGGACTCATGCCAGGACTTACCTTCTCTAATGAGCTCATCTCTAGAGATGAAGGTATG 1016 Query 61624 CATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAG 61683 || ||| || ||| | | | | ||| | |||| ||| || | ||| Sbjct 1017 CACACTGACTTCGCTTGTCTCATTTACAAGC---ATCTTAACAATAAAATCTCCAATGAG 1073 Query 61684 CGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCT 61743 | | |||||| || | || ||||| ||||||| ||||||| ||| || | Sbjct 1074 AGAATCCTTGAGATCATTACAAACGCTGTAACCATCGAACTGGAATTTGTGAGCGAGTCA 1133 Query 61744 TTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTT 61803 | || || ||||| || ||||| | ||| ||| ||||| ||| ||||| Sbjct 1134 CTACCAGTTGAGCTCATTGGTATGAACTCAAAACTCATGAGCCAGTACATTATGTTTGTA 1193 Query 61804 GCCGACCGTCTGTTGGTCGATTT--GGGTATGAAGCGGAT-CTATAATACGAAAAACCCA 61860 || || | || | ||| | | | || || || |||| | |||| ||| Sbjct 1194 GCTGATAGACTTCTCTTCGCTCTAGGAGTTCCAA---AATACTATTAAGTTGAAAATCCA 1250 Query 61861 TTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTA 61920 ||||| | ||||||||||| || | |||||| || || || |||||||| | ||| Sbjct 1251 TTTGAATGGATGGACATGATCTCATTAACTGGCAAAACAAACTTCTTCGAGAAGAGAGTA 1310 Query 61921 GGCGACTATCAA 61932 || || || ||| Sbjct 1311 GGAGAGTACCAA 1322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397464391667120