Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq21323 262 2e-67 seq20474 262 2e-67 >seq21323 Length=7606 Score = 262 bits (290), Expect = 2e-67 Identities = 240/299 (80%), Gaps = 7/299 (2%) Strand=Plus/Plus Query 387 TGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATG 446 |||| ||||||| | | | ||||||||| |||||||||||||||||||||||| |||| Sbjct 4676 TGGCAAAATGGTTTTTACCCACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTATG 4735 Query 447 CGAGTGTTTGGGTGTCAAACCCGTG-CGCGTAATGAAAGTGAACGGAGGTGGGAACCCGT 505 ||||||| ||| ||| | ||||||||||| |||| | || || | Sbjct 4736 CGAGTGTGCTAGTGGAAAAACTAACACGCGTAATGAAGGTGATTGA---TGCCAAGCGC- 4791 Query 506 GAGGGTGCACCATCGACCGATCCTGATG-TCTTCGGATGGATTTGAGTAAGAGCATAGCT 564 | | ||| |||||||||| | |||| ||| || | |||||||| ||||||| | Sbjct 4792 -AAGCAGCAGCATCGACCGACCATGATCCTCTGGTGAAAGGTTTGAGTACGAGCATAAAT 4850 Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 4851 GTTAGGACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAAGCCAGGGGAAACTCTGG 4910 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||||||| |||||||||| ||||||||||||||||| || |||||||||||||||| Sbjct 4911 TGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCGAACTTGGGTATAGGGGCGA 4969 Score = 154 bits (170), Expect = 6e-35 Identities = 133/164 (81%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||||| |||||| ||||||| | | |||||| |||| |||||| |||| ||||||||| | Sbjct 4288 TTCGAAGAGTCGGGTTGTTTTGTATTGCAGCCCTAAGTGGGAGATAAACTTCTTCTAAGG 4347 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 ||||||||| || |||||||||| ||||||| |||| ||||||||||||| ||| Sbjct 4348 CTAAATATTAATAGGAAACCGATAGCGAACAAGTACTGTGAAGGAAAGATGAAAAGAACT 4407 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 ||| ||||||||| |||| || |||||| ||||| | ||||| Sbjct 4408 TTGAAAAGAGAGTCAAAA--GACTTGAAATCGTTGAGAAGGAAG 4449 >seq20474 Length=5625 Score = 262 bits (290), Expect = 2e-67 Identities = 240/299 (80%), Gaps = 7/299 (2%) Strand=Plus/Minus Query 387 TGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATG 446 |||| ||||||| | | | ||||||||| |||||||||||||||||||||||| |||| Sbjct 2931 TGGCAAAATGGTTTTTACCCACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTATG 2872 Query 447 CGAGTGTTTGGGTGTCAAACCCGTG-CGCGTAATGAAAGTGAACGGAGGTGGGAACCCGT 505 ||||||| ||| ||| | ||||||||||| |||| | || || | Sbjct 2871 CGAGTGTGCTAGTGGAAAAACTAACACGCGTAATGAAGGTGATTGA---TGCCAAGCGC- 2816 Query 506 GAGGGTGCACCATCGACCGATCCTGATG-TCTTCGGATGGATTTGAGTAAGAGCATAGCT 564 | | ||| |||||||||| | |||| ||| || | |||||||| ||||||| | Sbjct 2815 -AAGCAGCAGCATCGACCGACCATGATCCTCTGGTGAAAGGTTTGAGTACGAGCATAAAT 2757 Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 2756 GTTAGGACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAAGCCAGGGGAAACTCTGG 2697 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||||||| |||||||||| ||||||||||||||||| || |||||||||||||||| Sbjct 2696 TGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCGAACTTGGGTATAGGGGCGA 2638 Score = 154 bits (170), Expect = 6e-35 Identities = 133/164 (81%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||||| |||||| ||||||| | | |||||| |||| |||||| |||| ||||||||| | Sbjct 3319 TTCGAAGAGTCGGGTTGTTTTGTATTGCAGCCCTAAGTGGGAGATAAACTTCTTCTAAGG 3260 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 ||||||||| || |||||||||| ||||||| |||| ||||||||||||| ||| Sbjct 3259 CTAAATATTAATAGGAAACCGATAGCGAACAAGTACTGTGAAGGAAAGATGAAAAGAACT 3200 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 ||| ||||||||| |||| || |||||| ||||| | ||||| Sbjct 3199 TTGAAAAGAGAGTCAAAA--GACTTGAAATCGTTGAGAAGGAAG 3158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079520313650