Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq21323 643 0.0 seq20474 643 0.0 >seq21323 Length=7606 Score = 643 bits (712), Expect = 0.0 Identities = 464/528 (88%), Gaps = 6/528 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| || ||||||||||||||||| Sbjct 6723 CTTTTGGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTACCCTAGGACACCTGCGTTATC 6664 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||| ||||| || || |||| Sbjct 6663 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACTATGTCTTCCACATAGATC 6604 Query 127 GGCCCGCGAAGGACCTT-AACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTG 185 || || | | ||| || |||| || | || || || | || | | || | Sbjct 6603 AGCA-GCAATGCTGCTTTAAAGCCATAACCTC-TCAAAGA-GAGG-GCTCTACCTAATGG 6548 Query 186 ATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTT 245 | ||||||||| || || || |||||||||||||||| ||||| || | ||||||||| Sbjct 6547 AATAAGTAAAATGACCATGAGAGTAGTGGTATTTCACTGACGCCGTAAAG-CTCCCACTT 6489 Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 || ||||||||| || | |||||||||||||||||||||||||||||||||||||||||| Sbjct 6488 ATACTACACCTCCCAGGCCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 6429 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct 6428 CTTTCCCCGCTGATTGTGCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATAGTAGAT 6369 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6368 AGGGACAGTGGGAACCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 6309 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6308 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 6249 Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 6248 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 6201 >seq20474 Length=5625 Score = 643 bits (712), Expect = 0.0 Identities = 464/528 (88%), Gaps = 6/528 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| || ||||||||||||||||| Sbjct 884 CTTTTGGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTACCCTAGGACACCTGCGTTATC 943 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||| ||||| || || |||| Sbjct 944 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACTATGTCTTCCACATAGATC 1003 Query 127 GGCCCGCGAAGGACCTT-AACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTG 185 || || | | ||| || |||| || | || || || | || | | || | Sbjct 1004 AGCA-GCAATGCTGCTTTAAAGCCATAACCTC-TCAAAGA-GAGG-GCTCTACCTAATGG 1059 Query 186 ATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTT 245 | ||||||||| || || || |||||||||||||||| ||||| || | ||||||||| Sbjct 1060 AATAAGTAAAATGACCATGAGAGTAGTGGTATTTCACTGACGCCGTAAAG-CTCCCACTT 1118 Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 || ||||||||| || | |||||||||||||||||||||||||||||||||||||||||| Sbjct 1119 ATACTACACCTCCCAGGCCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 1178 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1179 CTTTCCCCGCTGATTGTGCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATAGTAGAT 1238 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1239 AGGGACAGTGGGAACCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 1298 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1299 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 1358 Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1359 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 1406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634834320224