Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq21323 515 1e-143 seq20474 190 6e-46 >seq21323 Length=7606 Score = 515 bits (570), Expect = 1e-143 Identities = 398/466 (85%), Gaps = 9/466 (2%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| ||||||||||||||| | ||| |||||||||||||| ||||||||||||||||| Sbjct 2247 TATTTCTTGTCACTACCTCCCTGAGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCC 2188 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 || |||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 2187 TTAGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATCCTCCGTTA 2128 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 ||||| | ||||||||| ||| || ||||||||||||| |||| ||||||||| ||| Sbjct 2127 CCCGTGAACGCCATGGTAGTCCAATACACTACCATCGAAAGCTGATGGGGCAGAAACTTG 2068 Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGG 281 ||||| ||||| || ||| |||||||||||| | ||||||||||| || || | Sbjct 2067 AATGATGTATCGCGAGC-AAAGCCCATGCGATTCGATCAGTTATTATGAGTCGTCACAAT 2009 Query 282 AGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTT 339 || | | | | ||| ||| |||||||||||||||| ||||||| ||||| || || Sbjct 2008 AGACACAAGGAATATTGATTTGTTATCTAATAAATACAGCCCTTCCTAAAAGTCAGGCTT 1949 Query 340 TTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT-ACTATCAAA 398 |||||||||||||||||||||||||||||||||||||||| || | | ||||||| Sbjct 1948 AACAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--AATTTGATTATCAAA 1891 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA 458 ||||| ||||||| ||||||||||||||||||||||||||||||| | ||||||||| Sbjct 1890 TAAACTATAACTGTTTTAATGAGCCATTCGCAGTTTCACTGTATAACAT--TTATACTTA 1833 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1832 GACATGCATGGCTTAGTCTTTGAGACAAGCATATGACTACTGGCAG 1787 >seq20474 Length=5625 Score = 190 bits (210), Expect = 6e-46 Identities = 117/125 (94%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| ||||||||||||||| | ||| |||||||||||||| ||||||||||||||||| Sbjct 5360 TATTTCTTGTCACTACCTCCCTGAGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCC 5419 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 || |||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 5420 TTAGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATCCTCCGTTA 5479 Query 163 CCCGT 167 ||||| Sbjct 5480 CCCGT 5484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510062229248