Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000295675.1_202012-09-07] 22,363 sequences; 67,158,112 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq5401 156 3e-33 seq18508 116 3e-21 >seq5401 Length=3445 Score = 156 bits (172), Expect = 3e-33 Identities = 384/571 (67%), Gaps = 20/571 (4%) Strand=Plus/Plus Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073 || || |||||||| ||||||| || || || | ||| ||||||| ||| || |||| Sbjct 1445 GAAGCAAGGTTGCAAACAGCTACTTCATCTGGGGAGGTGTACTCGATAATCTCACAGCAC 1504 Query 66074 AGATT---ACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATT-GCATGC 66129 | || ||| | ||||| || | |||| ||| || ||||||| || || || Sbjct 1505 AAGTTGGAACTCTTG---ATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCTGTTAGCGTG- 1560 Query 66130 ATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCA 66189 ||||||||||| |||||| ||||| || || |||| ||| || ||||| ||||| | ||| Sbjct 1561 ATCCTTGTACAACATGTATGGAGTTCCAGTTTCAATTTGTGATTCAATAATGGCTTCCCA 1620 Query 66190 AAGAGCGCGTGCCTTCACCGTACGTACCGCCC-TACCTTTGCGTTCGTAATGTTCGTAGA 66248 || | || |||| || | | ||| | |||| | || || | |||| Sbjct 1621 TAGTTTTTGAGCTTTCATTGTTTTT-CTGCCAATTCCTTATTGCTCATACTTAGTATAGA 1679 Query 66249 GGTGTTCGAAGGATTCACCCCAT--ACTTCGGACAGACA--TGGACACTT-GTGTGGACA 66303 | |||||| | | |||| |||||| | || | ||| ||| || || || Sbjct 1680 GAGCTTCGAAT--TCCTAGCCATGAACTTCGAAGAGGCCCTTGG---CTTCGTTGGGGCA 1734 Query 66304 CATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAG 66363 | || | ||| || || || | || | ||| |||||||| || |||||||| Sbjct 1735 GAAAAGTGTCCAGTCTCCGTCAGCCTGGACTCTCTTCATGAATAGATCTGGAATCCAGAG 1794 Query 66364 GGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAG 66423 ||| | || | || | ||||| ||| ||||| | |||||||| || | | | || Sbjct 1795 AGCGAAAAACAAGTCTCTTGCTCTTTGTTCCTCTTTACCGTGATTCTTTCTTAGTTAAAG 1854 Query 66424 GAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTT 66483 ||| || |||| || || ||||||||||||| ||| || ||||| || ||| | | || Sbjct 1855 GAAATCGAAGACATCTGCGTGCCATGGTTCCAAGTAAATAGCGAATGAACCCTTTCTCTT 1914 Query 66484 GCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAG 66543 ||| || ||||||||||| || | ||| | |||||||| | | ||| |||||||| Sbjct 1915 GCCACCTCCTTGGTCGACATATCTAGCAGTCTCATTGAAGACTCTGAGCATGGGTACGAG 1974 Query 66544 CCCGTTAGATTTGCCATTGGTGCCGTCGATG 66574 || ||| | ||||| ||||| | |||| Sbjct 1975 ACCATTACTGTGACCATTAGTGCCCTTGATG 2005 >seq18508 Length=3287 Score = 116 bits (128), Expect = 3e-21 Identities = 523/824 (63%), Gaps = 6/824 (1%) Strand=Plus/Plus Query 66008 GCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCG 66067 |||| ||| || || || |||||||| | || || ||| |||| | ||||| || || Sbjct 1524 GCAATAGAAGCTAGATTACAGACAGCCACTTCATCTGGACTGGTAAATTCGACGATCTCA 1583 Query 66068 GTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCAT 66127 ||||| || ||| | || ||||| | ||| | | || || | |||||| Sbjct 1584 GTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTGGATTTTCTATTGCAA 1643 Query 66128 GCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGC 66187 ||||| ||||| | ||| || ||||| || ||||| ||| ||||| ||||| | Sbjct 1644 GCATCTTTGTAAAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGATTTAACCC 1703 Query 66188 CAAAGAGCGCGTGCCTTCACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATGTTCGTA 66246 || || | ||||| || || | | | || ||||| || ||| || | ||| Sbjct 1704 CAGAGCCATCTAGCCTTAACAGT-CTTGCGACCTCTACCAGTGGTTTCATACTCGATGTA 1762 Query 66247 GAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACAT 66306 || | || || ||||||||| | || | ||| || | | ||||||||| Sbjct 1763 AAGTTTCTCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCATTCATTTGGACACAT 1822 Query 66307 CAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGC 66366 || | |||||| ||| ||| || | | ||| || ||||| || |||| || || Sbjct 1823 GAGAGTCCAATCTTCATTTGCTTCAACTCTTCTCATGAAAAGATCTGGAGTCCAAAGAGC 1882 Query 66367 GTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAA 66426 |||||| || || | |||| | ||| || | |||||||| || | | | ||||| Sbjct 1883 GTAGAAAAGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTCTGAGTTAAAGGAA 1942 Query 66427 CTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCC 66486 || |||| || || ||||||||||| | |||| ||||| | ||| | | ||| || Sbjct 1943 GTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTCCCTTTCTTTTTCC 2002 Query 66487 GCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCC 66546 ||||||| || ||||| | ||| | ||||| || ||||| || | | || Sbjct 2003 ACCACCTTAATCCACGTATCTTGCGGTGTCATTGAAAACCTTTAACATTGGAATCAATCC 2062 Query 66547 GTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATT 66606 || || | || || || || |||| ||| | || | || ||| | ||| | Sbjct 2063 ATTTGAATATCCGTTTGTACCTCTGATGTAGGAGTCAGCAGCTCTTACATC--GGACACT 2120 Query 66607 CAGA--CCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAAT 66664 ||| || |||||||| || | ||| ||||| |||| | | || || Sbjct 2121 GAGACTCCGATACCACCAGCAGCCTTTGAGATAATAGCAATTTATTTTAAAGTTTCAAAA 2180 Query 66665 ATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTG 66724 || || ||||||||||| | || | || || | | |||| ||||| | | ||||| Sbjct 2181 ATACCATCAATGGAGTCTTCTTTTACAGTTAGCAAGAAGCAAGAACTCATCTAAGGTTTT 2240 Query 66725 GGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAA 66784 ||||| | | || || || || || || || ||||| | | || ||| || Sbjct 2241 GGTGTTCCAGAGTTAAACAGAGTTGGAGTGGCATGAGTAAACCACAGTTGACTCATCAAA 2300 Query 66785 TTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCC 66828 | ||| ||||||| | | |||| || ||| |||||| || Sbjct 2301 TCGTAAGTCTCGAACGCTGACTCAAGGTCTTCTTTATGAATACC 2344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397459643214320