Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq1124 176 9e-42 >seq1124 Length=18457 Score = 176 bits (194), Expect = 9e-42 Identities = 235/324 (73%), Gaps = 7/324 (2%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||||||| |||||| ||| | || ||||| | |||||||| || | ||| Sbjct 8185 AGGGGAGTGAAATAGAACCTGAAACCGTGTGCATACAAACAGTCGGAGCGGACTTGTTCC 8244 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 |||||||||| ||||||| |||||| | | ||| ||| ||| ||||| |||| Sbjct 8245 GTGACGGCGTACCTTTTGTATAATGGGTCAGCGACTTACAT-TCAGTGGCGAGCTTAACC 8303 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 || | || || || || |||| |||| | || |||||||| ||| | ||| Sbjct 8304 GCATAGGGA-----AGGCGCAGAGAAATCGAGTCCGAATAGGGCGAC-AGTCGCTGGGTG 8357 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 ||||| ||||||| |||||||| || | |||| ||||| || ||||| || ||| Sbjct 8358 TAGACCCGAAACCAGATGATCTACTCATGGCCAGGATGAAGGTGCCGTAACAGGTACTGG 8417 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||| ||||||| || |||||||| || |||||| | ||||||||||||||||| Sbjct 8418 AGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 8477 Query 311 CAATCAAACTGGGAAATAGCTCGT 334 || |||| |||||||||| || Sbjct 8478 TAAACAAATCTGGAAATAGCTGGT 8501 Score = 176 bits (194), Expect = 9e-42 Identities = 235/324 (73%), Gaps = 7/324 (2%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||||||| |||||| ||| | || ||||| | |||||||| || | ||| Sbjct 10252 AGGGGAGTGAAATAGAACCTGAAACCGTGTGCATACAAACAGTCGGAGCGGACTTGTTCC 10193 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 |||||||||| ||||||| |||||| | | ||| ||| ||| ||||| |||| Sbjct 10192 GTGACGGCGTACCTTTTGTATAATGGGTCAGCGACTTACAT-TCAGTGGCGAGCTTAACC 10134 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 || | || || || || |||| |||| | || |||||||| ||| | ||| Sbjct 10133 GCATAGGGA-----AGGCGCAGAGAAATCGAGTCCGAATAGGGCGAC-AGTCGCTGGGTG 10080 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 ||||| ||||||| |||||||| || | |||| ||||| || ||||| || ||| Sbjct 10079 TAGACCCGAAACCAGATGATCTACTCATGGCCAGGATGAAGGTGCCGTAACAGGTACTGG 10020 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||| ||||||| || |||||||| || |||||| | ||||||||||||||||| Sbjct 10019 AGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 9960 Query 311 CAATCAAACTGGGAAATAGCTCGT 334 || |||| |||||||||| || Sbjct 9959 TAAACAAATCTGGAAATAGCTGGT 9936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972549795840