Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq20397 102 3e-19 seq9159 98.7 4e-18 seq8363 96.9 1e-17 seq21787 93.3 2e-16 seq11986 93.3 2e-16 seq6708 93.3 2e-16 seq5368 86.0 3e-14 >seq20397 Length=17476 Score = 102 bits (112), Expect = 3e-19 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 546 TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTG 605 |||||||| ||||||| |||| ||||||||||||||||||||||||||||| ||||||| Sbjct 13923 TTTGAGTACGAGCATAAATGTTAGGACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTG 13864 Query 606 AAGCCAGAGGA 616 ||||||| ||| Sbjct 13863 AAGCCAGGGGA 13853 >seq9159 Length=13640 Score = 98.7 bits (108), Expect = 4e-18 Identities = 62/67 (93%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 546 TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTG 605 |||||||| ||||||| |||| ||||||||||||||||||||||||||||| ||||||| Sbjct 8307 TTTGAGTACGAGCATAAATGTTAGGACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTG 8248 Query 606 AAGCCAG 612 ||||||| Sbjct 8247 AAGCCAG 8241 >seq8363 Length=25497 Score = 96.9 bits (106), Expect = 1e-17 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||||| ||||||| |||| |||||||||||||| |||||||||||||| |||||||||| Sbjct 15891 GAGTACGAGCATAAATGTTAGGACCCGAAAGATGATGAACTATGCCTGAGTAGGGTGAAG 15832 Query 609 CCAGAGGA 616 |||||||| Sbjct 15831 CCAGAGGA 15824 >seq21787 Length=23618 Score = 93.3 bits (102), Expect = 2e-16 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||||| ||||||| |||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 17120 GAGTACGAGCATAAATGTTAGGACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAAG 17061 Query 609 CCAG 612 |||| Sbjct 17060 CCAG 17057 >seq11986 Length=15771 Score = 93.3 bits (102), Expect = 2e-16 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||||| ||||||| |||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 869 GAGTACGAGCATAAATGTTAGGACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAAG 810 Query 609 CCAG 612 |||| Sbjct 809 CCAG 806 >seq6708 Length=15862 Score = 93.3 bits (102), Expect = 2e-16 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||||| ||||||| |||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 3971 GAGTACGAGCATAAATGTTAGGACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAAG 3912 Query 609 CCAG 612 |||| Sbjct 3911 CCAG 3908 >seq5368 Length=14856 Score = 86.0 bits (94), Expect = 3e-14 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 546 TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTG 605 |||||||| ||||||| | || |||| | |||||| ||||||||||||||| ||||||| Sbjct 5150 TTTGAGTACGAGCATAAATTTTAGGACACTAAAGATTGTGAACTATGCCTGAGTAGGGTG 5209 Query 606 AAGCCAGAGGAA 617 ||||||||| || Sbjct 5210 AAGCCAGAGTAA 5221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079448306000