Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq16889 554 1e-155 seq5026 255 2e-65 >seq16889 Length=23811 Score = 554 bits (614), Expect = 1e-155 Identities = 368/407 (90%), Gaps = 5/407 (1%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1048 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 989 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 988 GAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTTTGTAAGACAGGCGT 929 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 |||||||||| ||| ||| ||||||| || ||||||||||| | ||||||| ||||||| Sbjct 928 GAAATCCCCGAGCTCAACTTGGGAATGGCGCTTGTGACTGCAAGGCTAGAGTATGTCAGA 869 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 ||||||| ||| |||| |||||||||||||||||||||| || |||||||||||| |||| Sbjct 868 GGGGGGTAGAA-TCCAAGTGTAGCAGTGAAATGCGTAGAGATTTGGAGGAACACCGATGG 810 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 809 CGAAGGCAGCCCCCTGGGATAAAACTGACGCTCATGCACGAAAGCGTGGGTAGCAAACAG 750 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 ||||||||||||||||||||||||||||||||||| | ||| | |||||||| | Sbjct 749 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATGTTTACTTGCTGTTGGGG----GCA 694 Query 363 TCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 |||| ||| || |||||||||| ||||| |||||||||||| ||| Sbjct 693 ACCTTAGTAGCGAAGCTAACGCGAGAAGTAAACCGCCTGGGGAGTAC 647 >seq5026 Length=9501 Score = 255 bits (282), Expect = 2e-65 Identities = 306/412 (74%), Gaps = 4/412 (1%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||| | ||||||| | ||||||||| |||||||||||||||||||||||| ||| | | Sbjct 8666 TACCGAAGGAATAAGGATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATCC 8725 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT-TGTGTAAGACAGGTG 121 |||||||| |||| ||| |||| ||||| ||||| |||||| ||| |||| |||| | Sbjct 8726 AAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGT-TAAGTCAGGGG 8784 Query 122 TGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAG 181 ||||| | ||| ||| | | ||| ||| |||| | || || | || Sbjct 8785 TGAAAGACGGTAGCTCAACTATCGCAGTGCCCTTGATACTGATGGGCTTGAATACACTAG 8844 Query 182 AGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241 ||| || ||||| || ||||| ||||||||| ||||||||| ||||||| || Sbjct 8845 AGGTAGGCGGAATGTGACAAGTAGCGGTGAAATGCATAGATATGTCACAGAACACCGATT 8904 Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301 ||||||||||| || | | || ||||||| | ||||||||||||||||| |||||| Sbjct 8905 GCGAAGGCAGCTTACTATGGTGTCATTGACGCTGAGGCACGAAAGCGTGGGGATCAAACA 8964 Query 302 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTAC 361 |||||||||||||||||||||||||||||||||||| ||| | |||| | ||| ||| Sbjct 8965 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGATGAATACTCGCTGTTAGCGATATAC 9024 Query 362 TTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATACTCCC 413 || | | ||| || |||| |||| || |||||||| ||| ||| Sbjct 9025 --AGTTAGCGGCTAAGCGAAAGCGTTAAGTATTCCACCTGGGGAGTACGCCC 9074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289268314880