Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq16889 470 4e-130 seq5026 379 6e-103 >seq16889 Length=23811 Score = 470 bits (520), Expect = 4e-130 Identities = 407/498 (82%), Gaps = 9/498 (2%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| || |||||||||||||||||||||||||||||||||||||||| || Sbjct 649 TACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGATGAT 590 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||| ||||||||| |||||||||| ||||||||| ||||||||| | || | Sbjct 589 GTGGATTAATTCGATGCAACGCGAAAAACCTTACCTGCTCTTGACATGTACGGAAGATTT 530 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 |||||| ||| || |||||||| || | ||||||| ||||||| ||||||||| Sbjct 529 CAGAGAT-GAGATTGTGCCTTCGGGA-ACCGTAACACAGGTGCTGCATGGCTGTCGTCAG 472 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 471 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTCTTTAGTTGC 412 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGG-GA 299 | ||| ||||||||| ||||||||||||||||||||||||||||||| || Sbjct 411 TACGC--AAGA---GCACTCTAAAGAGACTGCCGGTGACAAACCGGAGGAAGGTGGGAGA 357 Query 300 CGACG-TCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAAT 358 |||| |||| || ||||| ||||||||| ||||| ||||||| |||||||| | | Sbjct 356 TGACGCTCAAGTCCTCATGGCCCTTATGAGCAGGGCTTCACACGTCATACAATGGTAAGT 297 Query 359 ACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGAT 418 ||| |||| ||| || | |||| || |||||||| |||||| | || ||| ||||| Sbjct 296 ACAGAGGGAAGCAAAGCGGCGACGTGGAGCAAATCTCATAAAACTTATCGTAGTCCGGAT 237 Query 419 TGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCT 478 ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| Sbjct 236 CGTAGTCTGCAACTCGACTACGTGAAGTCGGAATCGCTAGTAATCGCAGATCAGCATGCT 177 Query 479 ACGGTGAATACGTTCCCG 496 ||||||||||||||||| Sbjct 176 GCGGTGAATACGTTCCCG 159 >seq5026 Length=9501 Score = 379 bits (420), Expect = 6e-103 Identities = 352/440 (80%), Gaps = 10/440 (2%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 9068 TACGCCCGCAAGGGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGAGGAGCAT 9127 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| | |||||| |||||||||| ||||| | ||| || Sbjct 9128 GTGGTTTAATTCGATGATACGCGAGGAACCTTACCCGGGCTTGAAAGTTAGTGAAGTATC 9187 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGAC-AGGTGATGCATGGTTGTCGTCA 179 |||||| || | ||| | ||||| | || ||||| ||||||| |||||||| Sbjct 9188 CAGAGATGGATGCGTCCGCAA----GGACAC-GAAACTAGGTGCTGCATGGCTGTCGTCA 9242 Query 180 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTG 239 ||||||| |||||| |||||||||||||||||||||||||||||||| || | ||||||| Sbjct 9243 GCTCGTGCCGTGAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCTATGTTTAGTTG 9302 Query 240 CCATCA--TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCG-GAGGAAGGTGG 296 ||| || ||| | |||| ||||||| ||||||| ||| ||||| | |||||||| || Sbjct 9303 CCAGCACGTTATGGTGGGGACTCTAAACAGACTGCCTGTG-CAAACAGAGAGGAAGGAGG 9361 Query 297 GGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACA 356 |||||||||||| |||||||| |||||| | |||||||||||||||||||||||| Sbjct 9362 GGACGACGTCAAGTCATCATGGCCCTTACGTCCGGGGCTACACACGTGCTACAATGGATG 9421 Query 357 ATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGG 416 |||| |||||||| | || | |||||||||| || |||| ||| |||||||| Sbjct 9422 GTACAGAGGGCAGCAAGCTGGCAACAGCAAGCAAATCTCAAAAAGCCATTCACAGTTCGG 9481 Query 417 ATTGTAGTCTGCAACTCGAC 436 |||| |||||||||||||| Sbjct 9482 ATTGGGGTCTGCAACTCGAC 9501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503613171200