Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq20067 132 8e-29 seq21787 100 5e-19 seq8363 100 5e-19 seq11986 96.9 6e-18 seq6708 96.9 6e-18 >seq20067 Length=43087 Score = 132 bits (146), Expect = 8e-29 Identities = 101/118 (86%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| || | |||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 15474 TACTCGCTGTATGCGTCAGTGTAGCACGCGTGCGGCCCAGGACATCTAAGGGCATCACAG 15415 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCA 118 ||||||||||||||||||||||| ||| | | | | ||||||||||||||| || Sbjct 15414 ACCTGTTATTGCCTCAAACTTCC-TTGTGTTTAGTCACAAAGTCCCTCTAAGAAGTCA 15358 >seq21787 Length=23618 Score = 100 bits (110), Expect = 5e-19 Identities = 60/63 (95%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 17169 TTAGTAGGCTAAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCACTCCACCAACTA 17228 Query 206 AGA 208 ||| Sbjct 17229 AGA 17231 >seq8363 Length=25497 Score = 100 bits (110), Expect = 5e-19 Identities = 60/63 (95%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 15954 TTAGTAGGCTAAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCACTCCACCAACTA 16013 Query 206 AGA 208 ||| Sbjct 16014 AGA 16016 >seq11986 Length=15771 Score = 96.9 bits (106), Expect = 6e-18 Identities = 80/97 (82%), Gaps = 7/97 (7%) Strand=Plus/Plus Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||| ||| |||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 918 TTAGTAGGCTAAGGTCTTGTTCGTTAACGGAATTAACCAGACAAATCACTCCACCAACTA 977 Query 206 AGA------ACGGCCATGCA-CCACCACCCATAGAAT 235 ||| | || || |||||||||||||||| Sbjct 978 AGACTAATGAATTATATTCAACCACCACCCATAGAAT 1014 >seq6708 Length=15862 Score = 96.9 bits (106), Expect = 6e-18 Identities = 80/97 (82%), Gaps = 7/97 (7%) Strand=Plus/Plus Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||| ||| |||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 4020 TTAGTAGGCTAAGGTCTTGTTCGTTAACGGAATTAACCAGACAAATCACTCCACCAACTA 4079 Query 206 AGA------ACGGCCATGCA-CCACCACCCATAGAAT 235 ||| | || || |||||||||||||||| Sbjct 4080 AGACTAATGAATTATATTCAACCACCACCCATAGAAT 4116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796601467320