Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq24755 131 3e-28 seq21056 125 1e-26 seq20069 125 1e-26 seq20068 125 1e-26 seq7068 125 1e-26 seq21788 102 1e-19 seq21787 102 1e-19 seq8363 102 1e-19 seq20067 73.4 7e-11 >seq24755 Length=5763 Score = 131 bits (144), Expect = 3e-28 Identities = 93/107 (87%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 66 GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCT 125 |||||||||||||||||||| ||||||| ||||||||||||| || ||| |||||| Sbjct 1744 GTCTAAACCCAGCTCACGTTTCCTATTATCGGGTGAACAATCCGACACTTGGTAAATTCT 1685 Query 126 GCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAAC 172 ||||| ||||||| ||||||||||||||||| ||||||||||||| Sbjct 1684 GCTTCACAATGATAGTAAGAGCCGACATCGAAGAATCAAAAAGCAAC 1638 >seq21056 Length=11315 Score = 125 bits (138), Expect = 1e-26 Identities = 87/99 (88%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 69 TAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCT 128 |||||||||||||||||||||||||| ||||||||||||| || ||| |||||||||| Sbjct 8392 TAAACCCAGCTCACGTTCCCTATTAGCGGGTGAACAATCCGACACTTGGTGAATTCTGCT 8451 Query 129 TCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAA 167 || ||||||||||||||||||||| ||| || ||||| Sbjct 8452 TCACAATGATAGGAAGAGCCGACATCAAAGAATAAAAAA 8490 >seq20069 Length=17632 Score = 125 bits (138), Expect = 1e-26 Identities = 87/99 (88%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 69 TAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCT 128 |||||||||||||||||||||||||| ||||||||||||| || ||| |||||||||| Sbjct 6474 TAAACCCAGCTCACGTTCCCTATTAGCGGGTGAACAATCCGACACTTGGTGAATTCTGCT 6415 Query 129 TCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAA 167 || ||||||||||||||||||||| ||| || ||||| Sbjct 6414 TCACAATGATAGGAAGAGCCGACATCAAAGAATAAAAAA 6376 Score = 107 bits (118), Expect = 3e-21 Identities = 80/94 (85%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 72 ACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCG 131 |||||| |||||||||||||||| ||||||||||||| | ||| |||||||||||| Sbjct 16242 ACCCAGTTCACGTTCCCTATTAGCGGGTGAACAATCCGAAACTTGGTGAATTCTGCTTCA 16301 Query 132 GTATGATAGGAAGAGCCGACATCGAAGGATCAAA 165 ||||||||||||||||||||| ||| || ||| Sbjct 16302 CAATGATAGGAAGAGCCGACATCAAAGAATAAAA 16335 Score = 78.8 bits (86), Expect = 2e-12 Identities = 70/88 (80%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 66 GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCT 125 |||||||||||||||||||| ||||||| ||||||||||||| || ||| |||||| Sbjct 12959 GTCTAAACCCAGCTCACGTTTCCTATTATCGGGTGAACAATCCGACACTTGGTAAATTCT 13018 Query 126 GCTTCGGTATGATAGGAAGAGCCGACAT 153 ||||| || ||| || || | || || Sbjct 13019 GCTTCACAATTATAAGATGAACAGAAAT 13046 >seq20068 Length=13123 Score = 125 bits (138), Expect = 1e-26 Identities = 87/99 (88%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 69 TAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCT 128 |||||||||||||||||||||||||| ||||||||||||| || ||| |||||||||| Sbjct 8169 TAAACCCAGCTCACGTTCCCTATTAGCGGGTGAACAATCCGACACTTGGTGAATTCTGCT 8110 Query 129 TCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAA 167 || ||||||||||||||||||||| ||| || ||||| Sbjct 8109 TCACAATGATAGGAAGAGCCGACATCAAAGAATAAAAAA 8071 >seq7068 Length=21581 Score = 125 bits (138), Expect = 1e-26 Identities = 87/99 (88%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 69 TAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCT 128 |||||||||||||||||||||||||| ||||||||||||| || ||| |||||||||| Sbjct 7198 TAAACCCAGCTCACGTTCCCTATTAGCGGGTGAACAATCCGACACTTGGTGAATTCTGCT 7257 Query 129 TCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAA 167 || ||||||||||||||||||||| ||| || ||||| Sbjct 7258 TCACAATGATAGGAAGAGCCGACATCAAAGAATAAAAAA 7296 Score = 78.8 bits (86), Expect = 2e-12 Identities = 70/88 (80%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 66 GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCT 125 |||||||||||||||||||| ||||||| ||||||||||||| || ||| |||||| Sbjct 713 GTCTAAACCCAGCTCACGTTTCCTATTATCGGGTGAACAATCCGACACTTGGTAAATTCT 654 Query 126 GCTTCGGTATGATAGGAAGAGCCGACAT 153 ||||| || ||| || || | || || Sbjct 653 GCTTCACAATTATAAGATGAACAGAAAT 626 Score = 73.4 bits (80), Expect = 7e-11 Identities = 40/40 (100%), Gaps = 0/40 (0%) Strand=Plus/Minus Query 162 CAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGC 201 |||||||||||||||||||||||||||||||||||||||| Sbjct 17561 CAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGC 17522 >seq21788 Length=7206 Score = 102 bits (112), Expect = 1e-19 Identities = 90/111 (81%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 62 GACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAA 121 |||||||||||||||| || |||| |||||| || | || ||||| || || || Sbjct 984 GACGGTCTAAACCCAGATCTTATTCC-TATTAGCGGATAAATAATCCGACAATTTATTAA 1042 Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAAC 172 ||||||||| ||||||| ||||||||||||||||| ||||||||||||| Sbjct 1043 TTCTGCTTCACAATGATAGTAAGAGCCGACATCGAAGAATCAAAAAGCAAC 1093 >seq21787 Length=23618 Score = 102 bits (112), Expect = 1e-19 Identities = 90/111 (81%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 62 GACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAA 121 |||||||||||||||| || |||| |||||| || | || ||||| || || || Sbjct 21668 GACGGTCTAAACCCAGATCTTATTCC-TATTAGCGGATAAATAATCCGACAATTTATTAA 21726 Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAAC 172 ||||||||| ||||||| ||||||||||||||||| ||||||||||||| Sbjct 21727 TTCTGCTTCACAATGATAGTAAGAGCCGACATCGAAGAATCAAAAAGCAAC 21777 Score = 75.2 bits (82), Expect = 2e-11 Identities = 58/68 (85%), Gaps = 1/68 (1%) Strand=Plus/Plus Query 160 ATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAA 219 |||||||||||||||||||| | | |||||||||||||||||||||||||||| Sbjct 15583 ATCAAAAAGCAACGTCGCTAAAATCAAAATA-TGCCACAAGCCAGTTATCCCTGTGGTAA 15641 Query 220 CTTTTCTG 227 |||||||| Sbjct 15642 CTTTTCTG 15649 >seq8363 Length=25497 Score = 102 bits (112), Expect = 1e-19 Identities = 90/111 (81%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 62 GACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAA 121 |||||||||||||||| || |||| |||||| || | || ||||| || || || Sbjct 20033 GACGGTCTAAACCCAGATCTTATTCC-TATTAGCGGATAAATAATCCGACAATTTATTAA 20091 Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAAC 172 ||||||||| ||||||| ||||||||||||||||| ||||||||||||| Sbjct 20092 TTCTGCTTCACAATGATAGTAAGAGCCGACATCGAAGAATCAAAAAGCAAC 20142 Score = 78.8 bits (86), Expect = 2e-12 Identities = 59/68 (87%), Gaps = 1/68 (1%) Strand=Plus/Plus Query 160 ATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAA 219 ||||||||||||||||||||| | | |||||||||||||||||||||||||||| Sbjct 14363 ATCAAAAAGCAACGTCGCTATAATCAAAATA-TGCCACAAGCCAGTTATCCCTGTGGTAA 14421 Query 220 CTTTTCTG 227 |||||||| Sbjct 14422 CTTTTCTG 14429 >seq20067 Length=43087 Score = 73.4 bits (80), Expect = 7e-11 Identities = 40/40 (100%), Gaps = 0/40 (0%) Strand=Plus/Plus Query 162 CAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGC 201 |||||||||||||||||||||||||||||||||||||||| Sbjct 34164 CAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGC 34203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854180248320