Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq16889 311 2e-82 seq5026 152 1e-34 >seq16889 Length=23811 Score = 311 bits (344), Expect = 2e-82 Identities = 272/336 (81%), Gaps = 2/336 (1%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| |||||| ||||||| || |||||||| ||| |||||||||| || | ||| Sbjct 1101 CTTTACAACCCGAAGGCCTTCTT-CATTCACGCGGCGTTG-CTGGATCAGGGTTCCCCCC 1158 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 1159 ATTGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 1218 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| |||||| |||||||||| ||| ||| |||| |||||||||| ||| ||||| | Sbjct 1219 TGTGGCTGATCTTCCTCTCAGAACAGCTACTGATCATCGCCTTGGTAGGCCTTTACCCTA 1278 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||| | | | ||| ||| |||| |||||||||||||||| ||| Sbjct 1279 CCAACTAGCTAATCAGCCATCGGCCGCTCTTTCAGCGACAGGCCCGAAGGTCCCCGCCTT 1338 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 || || || |||||||||||||| |||| ||||||||||||||| || Sbjct 1339 TCCTCCTCAGAGATTATGCGGTATTAGCACATCTTTCGATGCGTTATCCCCCACTAAAAG 1398 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 | | |||| | | ||||||||||||| |||||||| Sbjct 1399 GTACGTTCCGATGTATTACTCACCCGTTCGCCGCTC 1434 >seq5026 Length=9501 Score = 152 bits (168), Expect = 1e-34 Identities = 134/166 (81%), Gaps = 1/166 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||| |||||| |||| || | |||||| |||||||||| ||||||||||| Sbjct 8591 CACGCGGCAT-GGCTGGTTCAGAGTTGCCTCCATTGACCAATATTCCTTACTGCTGCCTC 8533 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| | |||||||||||| | | Sbjct 8532 CCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGGCCATCCTCTCAGATCCCCT 8473 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 | |||| | ||||||| ||| ||||| | ||||||| |||||| Sbjct 8472 AGTCATCGCGGTCTTGGTGGGCCGTTACCCCGCCAACTAACTAATC 8427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071724281600