Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq1124 331 3e-88 >seq1124 Length=18457 Score = 331 bits (366), Expect = 3e-88 Identities = 420/564 (74%), Gaps = 23/564 (4%) Strand=Plus/Minus Query 40 GCTCTCACTTCCCGGCATTCGGAGTTTGGT-TGATTTCGGTAAG-CTTGTGGGCCCCCTA 97 |||| |||| ||| |||||||||||| || ||| |||||| | | | ||||||| Sbjct 8625 GCTCGCACTCAACGGTATTCGGAGTTTGCAATGGTTT-GGTAAGTCGCGATGACCCCCTA 8567 Query 98 GACCATC-CAGTGCTCTACCTCCGG-GAAGAAACACGCGACGCTGCACCTAAATGCATTT 155 | |||| |||||||||||| ||| | || || | | | || |||||||| ||| Sbjct 8566 G-CCATAACAGTGCTCTACCCCCGTTGGTGATACTTGAGGCACT--ACCTAAATAGTTTT 8510 Query 156 CGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCC 215 ||| ||||||||||||| | | |||| || |||||||||||||| |||||| |||||| Sbjct 8509 CGGAGAGAACCAGCTATTTCCAGATTTGTTTAGCCTTTCACCCCTACCCACAGCTCATCC 8450 Query 216 CCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCT 275 ||| | |||||||| | ||||||||||| |||||| | |||| ||||| ||| Sbjct 8449 CCTAATTTTTCAACATTAGTGGGTTCGGACCTCCAGTACCTGTTACGGCACCTTCATCCT 8390 Query 276 GCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGG 335 | ||||| ||||||| | | ||||||||| | | || ||| |||||||||||| Sbjct 8389 GGCCATGAGTAGATCATCTGGTTTCGGGTCTACACCCAGCGACTGT--CGCCCTATTCGG 8332 Query 336 ACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCA 395 ||||| |||| || || || ||| | ||| |||| ||||| || || | || |||| Sbjct 8331 ACTCGATTTCTCTGCGCCTTCCCTATGCGG-TTAAGCTCGCCACTGAATGTAAG-TCGCT 8274 Query 396 GGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACG 455 | | |||| | ||||||| |||||||||| || || ||| || |||||||| Sbjct 8273 GACCCATTATACAAAAGGTACGCCGTCAC--GGAAC----AAG-----TCCGCTCCGACT 8225 Query 456 GATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTT 515 | ||||| ||||| |||||||||| |||||||||||||| || ||||| |||||| |||| Sbjct 8224 GTTTGTATGCACACGGTTTCAGGTTCTATTTCACTCCCCTCCCGGGGTTCTTTTCGCCTT 8165 Query 516 TCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTC 575 |||||||||||||| || | ||||||||| | |||||||||| ||| || ||||| Sbjct 8164 TCCCTCACGGTACTGGTTCACTATCGGTCGATATCGAGTATTTAGCCTTGGAGGATGGTC 8105 Query 576 CCGCCAGATTCACACGAAATTTCA 599 || ||| |||| || |||||| Sbjct 8104 CCCCCATGTTCAGACAGGATTTCA 8081 Score = 331 bits (366), Expect = 3e-88 Identities = 420/564 (74%), Gaps = 23/564 (4%) Strand=Plus/Plus Query 40 GCTCTCACTTCCCGGCATTCGGAGTTTGGT-TGATTTCGGTAAG-CTTGTGGGCCCCCTA 97 |||| |||| ||| |||||||||||| || ||| |||||| | | | ||||||| Sbjct 9812 GCTCGCACTCAACGGTATTCGGAGTTTGCAATGGTTT-GGTAAGTCGCGATGACCCCCTA 9870 Query 98 GACCATC-CAGTGCTCTACCTCCGG-GAAGAAACACGCGACGCTGCACCTAAATGCATTT 155 | |||| |||||||||||| ||| | || || | | | || |||||||| ||| Sbjct 9871 G-CCATAACAGTGCTCTACCCCCGTTGGTGATACTTGAGGCACT--ACCTAAATAGTTTT 9927 Query 156 CGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCC 215 ||| ||||||||||||| | | |||| || |||||||||||||| |||||| |||||| Sbjct 9928 CGGAGAGAACCAGCTATTTCCAGATTTGTTTAGCCTTTCACCCCTACCCACAGCTCATCC 9987 Query 216 CCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCT 275 ||| | |||||||| | ||||||||||| |||||| | |||| ||||| ||| Sbjct 9988 CCTAATTTTTCAACATTAGTGGGTTCGGACCTCCAGTACCTGTTACGGCACCTTCATCCT 10047 Query 276 GCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGG 335 | ||||| ||||||| | | ||||||||| | | || ||| |||||||||||| Sbjct 10048 GGCCATGAGTAGATCATCTGGTTTCGGGTCTACACCCAGCGACTGT--CGCCCTATTCGG 10105 Query 336 ACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCA 395 ||||| |||| || || || ||| | ||| |||| ||||| || || | || |||| Sbjct 10106 ACTCGATTTCTCTGCGCCTTCCCTATGCGG-TTAAGCTCGCCACTGAATGTAAG-TCGCT 10163 Query 396 GGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACG 455 | | |||| | ||||||| |||||||||| || || ||| || |||||||| Sbjct 10164 GACCCATTATACAAAAGGTACGCCGTCAC--GGAAC----AAG-----TCCGCTCCGACT 10212 Query 456 GATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTT 515 | ||||| ||||| |||||||||| |||||||||||||| || ||||| |||||| |||| Sbjct 10213 GTTTGTATGCACACGGTTTCAGGTTCTATTTCACTCCCCTCCCGGGGTTCTTTTCGCCTT 10272 Query 516 TCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTC 575 |||||||||||||| || | ||||||||| | |||||||||| ||| || ||||| Sbjct 10273 TCCCTCACGGTACTGGTTCACTATCGGTCGATATCGAGTATTTAGCCTTGGAGGATGGTC 10332 Query 576 CCGCCAGATTCACACGAAATTTCA 599 || ||| |||| || |||||| Sbjct 10333 CCCCCATGTTCAGACAGGATTTCA 10356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817132513280