Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq16889 217 3e-54 seq5026 127 4e-27 >seq16889 Length=23811 Score = 217 bits (240), Expect = 3e-54 Identities = 234/305 (77%), Gaps = 5/305 (2%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||||| |||| ||||||||| |||||||||| ||| || ||||||||||||||||||||| Sbjct 1133 GGCGTTGCTGGATCAGGGTTCCCCCCATTGTCCAAAATTCCCCACTGCTGCCTCCCGTAG 1192 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | || |||||||| | ||||| ||| Sbjct 1193 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCTTCCTCTCAGAACAGCTACTGAT 1252 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| ||| ||| | |||||||| |||||| ||| ||| ||||||| Sbjct 1253 CATCGCCTTGGTAGGCCTTTACCCTACCAACTAGCTAATCAGCCATCGGCCGCTCTTTCA 1312 Query 181 GCGATA-AATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 |||| | | |||| | | | || ||||| || |||||||||||||||| Sbjct 1313 GCGACAGGCCCGAAGGTCCCCGCCT--TTCC-TCCTCAGAGATTATGCGGTATTAGCACA 1369 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||| | |||||| || | || ||||| | ||| | | || |||||||||||| || Sbjct 1370 TCTTTCGATGCGTTATCCCCCACTAAAAGGTACGTT-CCGATGTATTACTCACCCGTTCG 1428 Query 300 CCACT 304 || || Sbjct 1429 CCGCT 1433 >seq5026 Length=9501 Score = 127 bits (140), Expect = 4e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||| ||| || |||||| |||||| || ||||||||||||||||| Sbjct 8586 GGCATGGCTGGTTCAGAGTTGCCTCCATTGACCAATATTCCTTACTGCTGCCTCCCGTAG 8527 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||| |||||||||||| ||| ||||| | || |||||||| | ||| || Sbjct 8526 GAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGGCCATCCTCTCAGATCCCCTAGTCAT 8467 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 || | |||||||||| ||| | | ||||||| |||||| Sbjct 8466 CGCGGTCTTGGTGGGCCGTTACCCCGCCAACTAACTAATC 8427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998143211520