Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq9159 91.5 2e-16 seq5368 91.5 2e-16 seq20067 78.8 1e-12 seq6116 78.8 1e-12 seq20068 75.2 1e-11 seq7068 75.2 1e-11 seq5707 75.2 1e-11 >seq9159 Length=13640 Score = 91.5 bits (100), Expect = 2e-16 Identities = 68/80 (85%), Gaps = 5/80 (6%) Strand=Plus/Plus Query 34 TCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTAAGCCTGCTTTGAA-----CACT 88 |||||||||||||||||||||||||||||| |||| |||||||||| | ||| Sbjct 8643 TCCTATTCTATTATTCCATGCTAATGTATTACGGCGCGAGCCTGCTTTATAATAGTTACT 8702 Query 89 CTAATTTTCTCAAGGTAAAA 108 |||||||||||||||||||| Sbjct 8703 CTAATTTTCTCAAGGTAAAA 8722 >seq5368 Length=14856 Score = 91.5 bits (100), Expect = 2e-16 Identities = 68/80 (85%), Gaps = 5/80 (6%) Strand=Plus/Minus Query 34 TCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTAAGCCTGCTTTGAA-----CACT 88 |||||||||||||||||||||||||||||| |||| |||||||||| | ||| Sbjct 4815 TCCTATTCTATTATTCCATGCTAATGTATTACGGCGCGAGCCTGCTTTATAATAGTTACT 4756 Query 89 CTAATTTTCTCAAGGTAAAA 108 |||||||||||||||||||| Sbjct 4755 CTAATTTTCTCAAGGTAAAA 4736 >seq20067 Length=43087 Score = 78.8 bits (86), Expect = 1e-12 Identities = 68/84 (81%), Gaps = 8/84 (10%) Strand=Plus/Plus Query 33 GTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTAAGCCTG-CTT-------TGAA 84 |||||||||||||||||||||||||||||||| |||| |||||| | | | | Sbjct 30146 GTCCTATTCTATTATTCCATGCTAATGTATTCCGGCGAGAGCCTGACATTTTATAGTAAT 30205 Query 85 CACTCTAATTTTCTCAAGGTAAAA 108 ||||||||||||||||| ||||| Sbjct 30206 AACTCTAATTTTCTCAAGATAAAA 30229 >seq6116 Length=4975 Score = 78.8 bits (86), Expect = 1e-12 Identities = 68/84 (81%), Gaps = 8/84 (10%) Strand=Plus/Minus Query 33 GTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTAAGCCTG-CTT-------TGAA 84 |||||||||||||||||||||||||||||||| |||| |||||| | | | | Sbjct 2451 GTCCTATTCTATTATTCCATGCTAATGTATTCCGGCGAGAGCCTGACATTTTATAGTAAT 2392 Query 85 CACTCTAATTTTCTCAAGGTAAAA 108 ||||||||||||||||| ||||| Sbjct 2391 AACTCTAATTTTCTCAAGATAAAA 2368 >seq20068 Length=13123 Score = 75.2 bits (82), Expect = 1e-11 Identities = 65/81 (80%), Gaps = 5/81 (6%) Strand=Plus/Plus Query 33 GTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTAAGCCTGCTTTGAA-----CAC 87 |||||||||||||||||| || |||| ||| |||| |||||||||| | || Sbjct 4521 GTCCTATTCTATTATTCCTTGTTAATAAATTTCGGCGCGAGCCTGCTTTATAATCCTTAC 4580 Query 88 TCTAATTTTCTCAAGGTAAAA 108 ||||||||||||||||||||| Sbjct 4581 TCTAATTTTCTCAAGGTAAAA 4601 >seq7068 Length=21581 Score = 75.2 bits (82), Expect = 1e-11 Identities = 65/81 (80%), Gaps = 5/81 (6%) Strand=Plus/Minus Query 33 GTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTAAGCCTGCTTTGAA-----CAC 87 |||||||||||||||||| || |||| ||| |||| |||||||||| | || Sbjct 10846 GTCCTATTCTATTATTCCTTGTTAATAAATTTCGGCGCGAGCCTGCTTTATAATCCTTAC 10787 Query 88 TCTAATTTTCTCAAGGTAAAA 108 ||||||||||||||||||||| Sbjct 10786 TCTAATTTTCTCAAGGTAAAA 10766 >seq5707 Length=12244 Score = 75.2 bits (82), Expect = 1e-11 Identities = 68/84 (81%), Gaps = 9/84 (11%) Strand=Plus/Minus Query 33 GTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTAAGCCTGCT------TTGAAC- 85 |||| ||||||||||||| |||||||||||| ||||| ||||||| ||| | Sbjct 2544 GTCCCTTTCTATTATTCCA-GCTAATGTATTCCGGCGTGAGCCTGCCATATTATTGTAAT 2486 Query 86 -ACTCTAATTTTCTCAAGGTAAAA 108 ||||||||||||||||||||||| Sbjct 2485 AACTCTAATTTTCTCAAGGTAAAA 2462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595051698480