Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq1124 170 5e-40 >seq1124 Length=18457 Score = 170 bits (188), Expect = 5e-40 Identities = 289/405 (71%), Gaps = 18/405 (4%) Strand=Plus/Minus Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAAC-TTGACCCT 62 |||||| | || ||||||||||||| ||||||||||| | | || ||| |||| | Sbjct 9059 CTACGCATCTCTGCCTCGCCTTAGGGGCCGACTCACCCTGCTCCGATGAACGTTGAACAG 9000 Query 63 GGAACCCTTGGATAATCGGCGGACGGGA----TTCCCACCCGTCACACGCTACTCATGCC 118 | |||| | || | | ||||| |||| ||| | ||| | | ||||||||||| | Sbjct 8999 GAAACCTTGGGCTTA-CGGCGT--GGGAGCTTTTCACTCCCATTAT-CGCTACTCATGTC 8944 Query 119 TGCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACA 176 |||||| |||| | || | ||||| || | | || | || |||| | || ||| Sbjct 8943 AGCATTCGCACTTCTGAT-ACCTCCAGCAGCCTTT-ACAAGCCACCTTCGCAGGCTTACA 8886 Query 177 CGACGCTCCCCTACCCAACCACAC---AGGTTGCCACAGCTTCGGCGGATAACTTAAGCC 233 |||||| |||||| | | || | || ||||||||| | ||| |||| ||| Sbjct 8885 GAACGCTCTCCTACCATATCTATTGCTAGATATCCGCAGCTTCGGTGTATAGCTTA-GCC 8827 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 ||| ||||| || |||| | | ||| || |||||||||||||||| ||||| |||| Sbjct 8826 CCGTTACATCTTCCGCGCAGGACGACTCGATCAGTGAGCTATTACGCTTTCTTTAAAGGG 8767 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 |||||||||| |||||||||||||| ||| | || |||| || ||| ||||| || Sbjct 8766 TGGCTGCTTCTAAGCCAACCTCCTGACTGTTTTAGCCTTCCCACTTCGTTTTCCACTTAG 8707 Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 | |||| ||| ||||||||| | |||||| ||||||||||| Sbjct 8706 -CTATACTTTGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 8663 Score = 170 bits (188), Expect = 5e-40 Identities = 289/405 (71%), Gaps = 18/405 (4%) Strand=Plus/Plus Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAAC-TTGACCCT 62 |||||| | || ||||||||||||| ||||||||||| | | || ||| |||| | Sbjct 9378 CTACGCATCTCTGCCTCGCCTTAGGGGCCGACTCACCCTGCTCCGATGAACGTTGAACAG 9437 Query 63 GGAACCCTTGGATAATCGGCGGACGGGA----TTCCCACCCGTCACACGCTACTCATGCC 118 | |||| | || | | ||||| |||| ||| | ||| | | ||||||||||| | Sbjct 9438 GAAACCTTGGGCTTA-CGGCGT--GGGAGCTTTTCACTCCCATTAT-CGCTACTCATGTC 9493 Query 119 TGCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACA 176 |||||| |||| | || | ||||| || | | || | || |||| | || ||| Sbjct 9494 AGCATTCGCACTTCTGAT-ACCTCCAGCAGCCTTT-ACAAGCCACCTTCGCAGGCTTACA 9551 Query 177 CGACGCTCCCCTACCCAACCACAC---AGGTTGCCACAGCTTCGGCGGATAACTTAAGCC 233 |||||| |||||| | | || | || ||||||||| | ||| |||| ||| Sbjct 9552 GAACGCTCTCCTACCATATCTATTGCTAGATATCCGCAGCTTCGGTGTATAGCTTA-GCC 9610 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 ||| ||||| || |||| | | ||| || |||||||||||||||| ||||| |||| Sbjct 9611 CCGTTACATCTTCCGCGCAGGACGACTCGATCAGTGAGCTATTACGCTTTCTTTAAAGGG 9670 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 |||||||||| |||||||||||||| ||| | || |||| || ||| ||||| || Sbjct 9671 TGGCTGCTTCTAAGCCAACCTCCTGACTGTTTTAGCCTTCCCACTTCGTTTTCCACTTAG 9730 Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 | |||| ||| ||||||||| | |||||| ||||||||||| Sbjct 9731 -CTATACTTTGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 9774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177297121280