Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq16889 197 1e-48 seq5026 105 6e-21 >seq16889 Length=23811 Score = 197 bits (218), Expect = 1e-48 Identities = 143/163 (88%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||||| ||||||||||||||| ||| || |||| ||||| | |||| Sbjct 220 TCGAGTTGCAGACTACGATCCGGACTACGATAAGTTTTATGAGATTTGCTCCACGTCGCC 279 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | || || ||||||||| |||||||||||||||||||||||||| | ||||||||||| Sbjct 280 GCTTTGCTTCCCTCTGTACTTACCATTGTATGACGTGTGAAGCCCTGCTCATAAGGGCCA 339 Query 121 TGAGGACTTGA-CGTCATC-CCCACCTTCCTCCGGTTTGTCAC 161 ||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 340 TGAGGACTTGAGCGTCATCTCCCACCTTCCTCCGGTTTGTCAC 382 >seq5026 Length=9501 Score = 105 bits (116), Expect = 6e-21 Identities = 119/158 (75%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 ||||||||||||| ||||||| ||| || |||| || |||| ||| | | || Sbjct 9500 TCGAGTTGCAGACCCCAATCCGAACTGTGAATGGCTTTTTGAGATTTGCTTGCTGTTGCC 9441 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || |||||||||| |||||||| ||||||| ||||| | ||||||||| Sbjct 9440 AGCTTGCTGCCCTCTGTACCATCCATTGTAGCACGTGTGTAGCCCCGGACGTAAGGGCCA 9381 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTC-CGGTTTG 157 ||| ||||||||||| ||||| |||||||| | ||||| Sbjct 9380 TGATGACTTGACGTCGTCCCCTCCTTCCTCTCTGTTTG 9343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415896348400