Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq5026 185 1e-44 seq16889 159 6e-37 >seq5026 Length=9501 Score = 185 bits (204), Expect = 1e-44 Identities = 222/295 (75%), Gaps = 10/295 (3%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| |||||||||||| | || || || | |||||||| | ||||| Sbjct 8955 CCCACGCTTTCGTGCCTCAGCGTCAATGACACCATAGTAAGCTGCCTTCGCAATCGGTGT 8896 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACA---CACGGAATTCCGATTGCCTCTCCAG 117 || ||||||| ||||||||||||||| ||| |||||| | ||||| | Sbjct 8895 TCTGTGACATATCTATGCATTTCACCGCTACTTGTCAC---ATTCCGCCTACCTCTAGTG 8839 Query 118 CACTCAAGAAAAACAGTTTCAAATGCAG-GCTATGGGTTGAGCCCATAGT-TTTCACATC 175 | ||||| | |||| |||| ||| || || | |||||| | || |||||| | Sbjct 8838 TATTCAAGCCCATCAGTATCAAGGGCACTGCGATAG-TTGAGCT-ACCGTCTTTCACCCC 8781 Query 176 TGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCAC 235 |||||| | |||||||| | ||||||| ||||||||||||||||||||||||| | Sbjct 8780 TGACTTAACAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTTGGATC 8721 Query 236 CTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 || |||||||||||||||||||||||| ||||||||| ||||||||| |||| Sbjct 8720 CTCCGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGATCCTTATTCCTTCGGTA 8666 >seq16889 Length=23811 Score = 159 bits (176), Expect = 6e-37 Identities = 214/294 (73%), Gaps = 9/294 (3%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| || | |||||||||| |||| | |||||||||| ||||| Sbjct 760 CCCACGCTTTCGTGCATGAGCGTCAGTTTTATCCCAGGGGGCTGCCTTCGCCATCGGTGT 819 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| || |||||||||||||| ||||||| ||| ||| ||||| || Sbjct 820 TCCTCCAAATCTCTACGCATTTCACTGCTACACTTGGA-TTCTACCCCCCTCTGACATAC 878 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGG----GTTGAGCCCATAGTTTTCACATCT 176 || || |||| ||| || || || ||||||| | | |||||| || Sbjct 879 TCTAGCCTTGCAGTCACAA--GC--GCCATTCCCAAGTTGAGCTCGGGGATTTCACGCCT 934 Query 177 GACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACC 236 | ||| | |||||| | | | |||||| |||| ||| |||| ||||||| || || Sbjct 935 GTCTTACAAAACCGCCTGCGCACGCTTTACGCCCAGTAATTCCGATTAACGCTCGCACCC 994 Query 237 TACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 995 TACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTCAGGTA 1048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828593494120