Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq16889 352 7e-95 seq5026 194 4e-47 >seq16889 Length=23811 Score = 352 bits (390), Expect = 7e-95 Identities = 333/416 (80%), Gaps = 14/416 (3%) Strand=Plus/Plus Query 3 ACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA 62 ||||||||||||||||||||||||||| |||||||| | |||| |||||| || | |||| Sbjct 1100 ACTTTACAACCCGAAGGCCTTCTTCATTCACGCGGCGTTGCTGGATCAGGGTTCCCCCCA 1159 Query 63 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 122 |||| ||| |||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 1160 TTGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 1219 Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGC 182 ||||||| || |||||||||| |||||| |||| |||||| ||| |||| |||||| | Sbjct 1220 GTGGCTGATCTTCCTCTCAGAACAGCTACTGATCATCGCCTTGGTAGGCCTTTACCCTAC 1279 Query 183 CAACTAGCTAATC--CCATCTG-GGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTC 239 ||||||||||||| ||||| | | || | | || || |||||||||||||||| | Sbjct 1280 CAACTAGCTAATCAGCCATCGGCCGCTCTTTC---AGCGACAGGCCCGAAGGTCCCCGCC 1336 Query 240 TTTGGTCTTGCGACGTTATGCGGTATTAGC-CACCGTTTCCAGTGGTTATCCCCCTCCAT 298 ||| || | || ||||||||||||||| || | |||| | |||||||||| | | Sbjct 1337 TTTCCTCCTCAGAGATTATGCGGTATTAGCACATC-TTTCGATGCGTTATCCCCCACTAA 1395 Query 299 CAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGC 358 ||| | |||| | ||||||||||||| |||| |||| || | || | | ||| Sbjct 1396 AAGGTACGTTCCGATGTATTACTCACCCGTTCGCCGCTCGCCA-CCAACCCG-AAG---- 1449 Query 359 TTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || || | ||| ||||||||||||||| | || ||||||||||||||||||||| Sbjct 1450 GTCGTGCTGCCGCTCGACTTGCATGTGTAAAGCACGCCGCCAGCGTTCAATCTGAG 1505 >seq5026 Length=9501 Score = 194 bits (214), Expect = 4e-47 Identities = 159/192 (83%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCT-TCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||| |||| ||| || ||||| | ||||||||||||||| |||| |||| |||| Sbjct 8618 TTTACGACCCAGAGGGCTGTCTTCCTGCACGCGGCATGGCTGGTTCAGAGTTGCCTCCAT 8559 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 || ||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 8558 TGACCAATATTCCTTACTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTG 8499 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||| || |||||||||||| | |||| |||| | || |||||||| |||||||||| Sbjct 8498 TGGGGGGCCATCCTCTCAGATCCCCTAGTCATCGCGGTCTTGGTGGGCCGTTACCCCGCC 8439 Query 184 AACTAGCTAATC 195 ||||| |||||| Sbjct 8438 AACTAACTAATC 8427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222085598720