Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq16889 324 4e-86 seq5026 194 5e-47 >seq16889 Length=23811 Score = 324 bits (358), Expect = 4e-86 Identities = 286/359 (80%), Gaps = 26/359 (7%) Strand=Plus/Minus Query 165 CTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAG 224 |||||||||||||||||| ||||| ||| ||||||||||| |||||||||| | ||||| Sbjct 1294 CTGATTAGCTAGTTGGTAGGGTAAAGGCCTACCAAGGCGATGATCAGTAGCTGTTCTGAG 1235 Query 225 AGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTG 284 ||| |||| |||||| ||| |||||||||||| ||| |||||||||||||||||||||| Sbjct 1234 AGGAAGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTG 1175 Query 285 GGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC 344 |||||| ||| |||||||| || |||||| |||||||||||||||| || ||||||| Sbjct 1174 GGGAATTTTGGACAATGGGGGGAACCCTGATCCAGCAACGCCGCGTGAATGAAGAAGGCC 1115 Query 345 TTCGGGTCGTAAAGCTCTGTCCTCAAGG----AAG-----------ATA----------A 379 ||||||| |||||| ||| | ||| || ||| ||| Sbjct 1114 TTCGGGTTGTAAAGTTCTTTTGTCAGGGAGCAAAGGGTGGAGGCTAATACCTTCTACCGC 1055 Query 380 TGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTA 439 ||| |||| ||| || |||| ||||||||||||||||||||||||||||||||||||| Sbjct 1054 TGAGAGTACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTA 995 Query 440 GGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAG 498 ||| || ||||||| |||||||||| |||||||||| ||||| ||| ||||| |||| Sbjct 994 GGGTGCGAGCGTTAATCGGAATTACT-GGGCGTAAAGCGTGCGCAGGCGGTTTTGTAAG 937 >seq5026 Length=9501 Score = 194 bits (214), Expect = 5e-47 Identities = 263/367 (72%), Gaps = 21/367 (6%) Strand=Plus/Plus Query 154 TAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTA 213 ||| || ||| |||||| ||||||| ||||||||| |||||| | |||| | || Sbjct 8414 TAGGCCATCGTAAGATTAGTTAGTTGGCGGGGTAACGGCCCACCAAGACCGCGATGACTA 8473 Query 214 GCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGG 273 | || |||||||| || | ||||| ||| |||||||||||| ||| ||||||||||| Sbjct 8474 GGGGATCTGAGAGGATGGCCCCCCACACTGGTACTGAGACACGGACCAGACTCCTACGGG 8533 Query 274 AGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAG 333 |||||||||| ||||||||| |||||| || |||| |||| | |||||||| Sbjct 8534 AGGCAGCAGTAAGGAATATTGGTCAATGGAGGCAACTCTGAACCAGCCATGCCGCGTGCA 8593 Query 334 CGATGA-AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--------------TA 378 || || || ||| |||||||||| || | | |||| | || Sbjct 8594 GGAAGACAGCCCTCTGGGTCGTAAACTGCTTTTATTCGGGAATAAACCTACTTACGTGTA 8653 Query 379 A-----TGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAA 433 | ||| |||| |||| ||| ||||||||| |||||||||||||||||||| Sbjct 8654 AGTAGCTGAATGTACCGAAGGAATAAGGATCGGCTAACTCCGTGCCAGCAGCCGCGGTAA 8713 Query 434 TACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTC 493 |||| ||| | ||||||||||||| ||| | ||| ||||||||||||||| || | Sbjct 8714 TACGGAGGATCCAAGCGTTATCCGGATTTA-TTGGGTTTAAAGGGTGCGTAGGCGGCCTG 8772 Query 494 TTAAGTC 500 ||||||| Sbjct 8773 TTAAGTC 8779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497214817280