Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq16889 325 9e-87 seq5026 289 7e-76 >seq16889 Length=23811 Score = 325 bits (360), Expect = 9e-87 Identities = 321/410 (78%), Gaps = 11/410 (3%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||| ||| || |||| |||||||||||||||||||||||||||||||||||||||| || Sbjct 1048 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 989 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 ||||||| |||||||||||||||||||| ||||| ||| ||||| |||| ||| || Sbjct 988 GAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTTTGTAAGACAGGCGT 929 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGT--GCAGGA 178 |||| | ||||||| || | || ||| |||||| ||||||||| | || Sbjct 928 GAAATCCCCGAGCTCAACTTGGGAATGGCGCTTGTGACTGCAAGGCTAGAGTATGTCAGA 869 Query 179 GGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGT 238 |||| || |||| || |||||||| |||||||||||||| ||| ||||||||||| | Sbjct 868 GGGGG--GTAGAAT-CCAAGTGTAGCAGTGAAATGCGTAGAGATTTGGAGGAACACCGAT 812 Query 239 GGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAAC 298 ||||||||| || |||| | ||||||| || | || |||||||||||| ||||||| Sbjct 811 GGCGAAGGCAGCCCCCTGGGATAAAACTGACGCTCATGCACGAAAGCGTGGGTAGCAAAC 752 Query 299 AGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT 358 |||||||||||||||||||||||||||| ||||||||| |||| | ||| |||| ||| Sbjct 751 AGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATGTTTACTTGCTGTTGGGG-GCA- 694 Query 359 AAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | || || ||| ||||| | ||||| || ||||||||||| Sbjct 693 ----ACCTTAGTAGCGAAGCTAACGCGAGAAGTAAACCGCCTGGGGAGTA 648 >seq5026 Length=9501 Score = 289 bits (320), Expect = 7e-76 Identities = 302/394 (77%), Gaps = 12/394 (3%) Strand=Plus/Plus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78 ||||||||| |||||||||||||||||||||||| ||| | ||||||||||||| ||| Sbjct 8684 CGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATCCAAGCGTTATCCGGATTTA 8743 Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138 |||| ||||||||||||||| || | ||||||||| |||||||| | | ||||||| Sbjct 8744 TTGGGTTTAAAGGGTGCGTAGGCGGCCTGTTAAGTCAGGGGTGAAAGACGGTAGCTCAAC 8803 Query 139 CCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAG 198 | | ||| |||| |||| ||||| || | || || || | | ||||| Sbjct 8804 TATCGCAGTGCCCTTGATACTGATGGGCTTGAATACACTAGAGGTAGGCGGAATGTGACA 8863 Query 199 TGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGA 258 ||||||||||||||| ||||||| ||||||| | |||||||| |||| || Sbjct 8864 AGTAGCGGTGAAATGCATAGATATGTCACAGAACACCGATTGCGAAGGCAGCTTACTATG 8923 Query 259 CTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAG 318 ||| | |||| ||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 8924 GTGTCATTGACGCTGAGGCACGAAAGCGTGGGGATCAAACAGGATTAGATACCCTGGTAG 8983 Query 319 TCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGT--GCCGC- 375 |||||||| ||||||||||||||| | ||| | | ||| | | || || || Sbjct 8984 TCCACGCCCTAAACGATGAATACTCGCTGTTAGCG---ATA-----TACAGTTAGCGGCT 9035 Query 376 -AGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| || || |||||||||||||||||||||| Sbjct 9036 AAGCGAAAGCGTTAAGTATTCCACCTGGGGAGTA 9069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202890536960