Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1124 547 2e-153 >seq1124 Length=18457 Score = 547 bits (606), Expect = 2e-153 Identities = 422/495 (85%), Gaps = 6/495 (1%) Strand=Plus/Plus Query 1 TCGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 ||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 8326 TCGAGTCCGAATAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAGATGATCTACTCAT 8385 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||| Sbjct 8386 GGCCAGGATGAAGGTGCCGTAACAGGTACTGGAGGTCCGAACCCACTAATGTTGAAAAAT 8445 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 8446 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAATCTGGAAATAGCTGGTTCTC 8505 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATGG 240 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 8506 TCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCAACGGGGGTAGAGCACTGTTATGG 8565 Query 241 CTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTACC 300 |||||||||||| ||||||||||||||||||||||||||||||| | | ||| | | Sbjct 8566 CTAGGGGGTCATCGCGACTTACCAAACCATTGCAAACTCCGAATACCGTTGAGTGCGAGC 8625 Query 301 GCGGGAGTGAGGGCAT-GGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTAT 359 ||||| | | ||| ||||||||| ||||| | ||||| || || || ||| Sbjct 8626 TTGGGAGACA-GACATCGGGTGCTAACGTCCGGTGTCAAGAGGGAAACAACCCAGACCGC 8684 Query 360 CAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGC 419 ||||||||| ||| ||| | |||||||| || |||||||| || ||||| |||| Sbjct 8685 CAGCTAAGGTCCC-AAAGTATAGCTAAGTGGAA--AACGAAGTGGGAAGGCTAAAACAGT 8741 Query 420 TAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGA 479 |||| |||||||| |||||||||| | |||||||| |||||| |||||||| |||| Sbjct 8742 CAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTTAAAGAAAGCGTAATAGCTCACTGATCGA 8800 Query 480 GGAGTCGGGCGTGGA 494 | ||| ||| ||| Sbjct 8801 GTCGTCCTGCGCGGA 8815 Score = 547 bits (606), Expect = 2e-153 Identities = 422/495 (85%), Gaps = 6/495 (1%) Strand=Plus/Minus Query 1 TCGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 ||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 10111 TCGAGTCCGAATAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAGATGATCTACTCAT 10052 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||| Sbjct 10051 GGCCAGGATGAAGGTGCCGTAACAGGTACTGGAGGTCCGAACCCACTAATGTTGAAAAAT 9992 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 9991 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAATCTGGAAATAGCTGGTTCTC 9932 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATGG 240 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 9931 TCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCAACGGGGGTAGAGCACTGTTATGG 9872 Query 241 CTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTACC 300 |||||||||||| ||||||||||||||||||||||||||||||| | | ||| | | Sbjct 9871 CTAGGGGGTCATCGCGACTTACCAAACCATTGCAAACTCCGAATACCGTTGAGTGCGAGC 9812 Query 301 GCGGGAGTGAGGGCAT-GGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTAT 359 ||||| | | ||| ||||||||| ||||| | ||||| || || || ||| Sbjct 9811 TTGGGAGACA-GACATCGGGTGCTAACGTCCGGTGTCAAGAGGGAAACAACCCAGACCGC 9753 Query 360 CAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGC 419 ||||||||| ||| ||| | |||||||| || |||||||| || ||||| |||| Sbjct 9752 CAGCTAAGGTCCC-AAAGTATAGCTAAGTGGAA--AACGAAGTGGGAAGGCTAAAACAGT 9696 Query 420 TAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGA 479 |||| |||||||| |||||||||| | |||||||| |||||| |||||||| |||| Sbjct 9695 CAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTTAAAGAAAGCGTAATAGCTCACTGATCGA 9637 Query 480 GGAGTCGGGCGTGGA 494 | ||| ||| ||| Sbjct 9636 GTCGTCCTGCGCGGA 9622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689165434880