Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq5026 271 2e-70 seq16889 185 2e-44 >seq5026 Length=9501 Score = 271 bits (300), Expect = 2e-70 Identities = 232/281 (83%), Gaps = 4/281 (1%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCC-ACACG 59 ||||||||||||||||||||||||| ||||||| | ||||||| || ||| | ||||| Sbjct 8706 GGCTGCTGGCACGGAGTTAGCCGATCCTTATTCCTTCGGTACATTCA-GCTACTTACACG 8648 Query 60 TG-GAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCAC 118 | | |||||| |||||| ||||||| ||||||| | || || | || |||| ||| Sbjct 8647 TAAGTAGGTTT-ATTCCCGAATAAAAGCAGTTTACGACCCAGAGGGCTGTCTTCCTGCAC 8589 Query 119 GCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGT 178 || | ||||||||||||| | | ||||||||||||||||||| ||||||||||||||| Sbjct 8588 GCGGCATGGCTGGTTCAGAGTTGCCTCCATTGACCAATATTCCTTACTGCTGCCTCCCGT 8529 Query 179 AGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCC 238 |||||| ||| |||||||||||| ||| |||||||| || |||||||||| |||||| | Sbjct 8528 AGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGGCCATCCTCTCAGATCCCCTAGTC 8469 Query 239 ATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 |||| | || ||||||||||||||||||| |||| ||||| Sbjct 8468 ATCGCGGTCTTGGTGGGCCGTTACCCCGCCAACTAACTAAT 8428 >seq16889 Length=23811 Score = 185 bits (204), Expect = 2e-44 Identities = 215/293 (73%), Gaps = 23/293 (8%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||| ||||||||| ||||||||| | |||||| || || || Sbjct 1008 GGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTCAGGTAC--------TCTCAGCGGT 1059 Query 61 GGAAGGTTTTAT--------------TCCCTTATAAAAGAAGTTTACAATCCGTAGAACC 106 |||||| ||| ||||| | ||||||| ||||||| ||| || || Sbjct 1060 AGAAGGTATTAGCCTCCACCCTTTGCTCCCTGACAAAAGAACTTTACAACCCGAAGG-CC 1118 Query 107 TTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACT 166 ||| || ||||||| | | ||||| |||| | | |||||| |||| ||||| |||| Sbjct 1119 TTCTTCATTCACGCGGCGTTGCTGGATCAGGGTTCCCCCCATTGTCCAAAATTCCCCACT 1178 Query 167 GCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCA 226 |||||||||||||||||| ||| |||||||||||| ||| ||||| || |||||||||| Sbjct 1179 GCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCTTCCTCTCA 1238 Query 227 GAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 |||| ||| ||| | | || ||| |||| |||||| || |||| ||||| Sbjct 1239 GAACAGCTACTGATCATCGCCTTGGTAGGCCTTTACCCTACCAACTAGCTAAT 1291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068525104640