Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq20067 199 1e-48 >seq20067 Length=43087 Score = 199 bits (220), Expect = 1e-48 Identities = 275/383 (72%), Gaps = 50/383 (13%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGC---------GCCTG 93 ||||| ||||||||||||||| | ||| |||||||||||||| ||||| Sbjct 14899 TATTTCTTGTCACTACCTCCCTGAGTCAGGATTGGGTAATTTAAAATTATTTTTAGCCTG 14840 Query 94 CTGCCTTCCTTGGATGTGGTAGCC------GTTTCTCAGGCTCCCTCTCCGGAATCGAAC 147 ||||||||||| |||||| || |||||||||||||||||||||||||||||| Sbjct 14839 CTGCCTTCCTTAGATGTGTTAATTATTAAAGTTTCTCAGGCTCCCTCTCCGGAATCGAAC 14780 Query 148 CCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTA---------------TC-- 190 |||||| | ||||||||||| | ||||| | | || || || Sbjct 14779 CCTAATCCTCCGTTACCCGTGAACGCCATGTT--GACATTAATTTTTAAGAATTATTCAT 14722 Query 191 ---CTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCC 247 ||||||||||||| |||| ||||||||| |||||||| ||||| | ||| ||| Sbjct 14721 ACACTACCATCGAAAGCTGATGGGGCAGAAACTTGAATGATGTATCGC--GAGCAAAGCC 14664 Query 248 A-TGCGAT-----TCGT--TAAGTTATTATGAATCACCA-AGGAGCCCCGAAGGGCGTTG 298 | | | || | | | ||||||||||| || || | || | | | | ||| Sbjct 14663 ACTTCAATATAAATAATAATCAGTTATTATGAGTCGTCACAATAGACACAAGGAATATTG 14604 Query 299 GTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTTTAGCATGTATTAGCT 356 ||| |||||||||||||||| ||||||| ||||| || || |||||||||||||| Sbjct 14603 ATTTGTTATCTAATAAATACAGCCCTTCCTAAAAGTCAGGCTTAACAGCATGTATTAGCT 14544 Query 357 CTAGAATTACCACGGTTATCCAT 379 ||||||||||||||||||||||| Sbjct 14543 CTAGAATTACCACGGTTATCCAT 14521 Score = 140 bits (154), Expect = 1e-30 Identities = 94/104 (90%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 397 AATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACT 456 ||| | | ||||||| ||||||||||||||||||||||||||||||| | ||||||| Sbjct 14426 AATGATCTATAACTGTTTTAATGAGCCATTCGCAGTTTCACTGTATAACAT--TTATACT 14369 Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTG 500 ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 14368 TAGACATGCATGGCTTAGTCTTTGAGACAAGCATATGACTACTG 14325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510011525120