Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1748 116 3e-21 >seq1748 Length=94692 Score = 116 bits (128), Expect = 3e-21 Identities = 523/824 (63%), Gaps = 6/824 (1%) Strand=Plus/Minus Query 66008 GCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCG 66067 |||| ||| || || || |||||||| | || || ||| |||| | ||||| || || Sbjct 40273 GCAATAGAAGCTAGATTACAGACAGCCACTTCATCTGGACTGGTAAATTCGACGATCTCA 40214 Query 66068 GTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCAT 66127 ||||| || ||| | || ||||| | ||| | | || || | |||||| Sbjct 40213 GTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTGGATTTTCTATTGCAA 40154 Query 66128 GCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGC 66187 ||||| ||||| | ||| || ||||| || ||||| ||| ||||| ||||| | Sbjct 40153 GCATCTTTGTAAAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGATTTAACCC 40094 Query 66188 CAAAGAGCGCGTGCCTTCACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATGTTCGTA 66246 || || | ||||| || || | | | || ||||| || ||| || | ||| Sbjct 40093 CAGAGCCATCTAGCCTTAACAGT-CTTGCGACCTCTACCAGTGGTTTCATACTCGATGTA 40035 Query 66247 GAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACAT 66306 || | || || ||||||||| | || | ||| || | | ||||||||| Sbjct 40034 AAGTTTCTCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCATTCATTTGGACACAT 39975 Query 66307 CAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGC 66366 || | |||||| ||| ||| || | | ||| || ||||| || |||| || || Sbjct 39974 GAGAGTCCAATCTTCATTTGCTTCAACTCTTCTCATGAAAAGATCTGGAGTCCAAAGAGC 39915 Query 66367 GTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAA 66426 |||||| || || | |||| | ||| || | |||||||| || | | | ||||| Sbjct 39914 GTAGAAAAGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTCTGAGTTAAAGGAA 39855 Query 66427 CTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCC 66486 || |||| || || ||||||||||| | |||| ||||| | ||| | | ||| || Sbjct 39854 GTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTCCCTTTCTTTTTCC 39795 Query 66487 GCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCC 66546 ||||||| || ||||| | ||| | ||||| || ||||| || | | || Sbjct 39794 ACCACCTTAATCCACGTATCTTGCGGTGTCATTGAAAACCTTTAACATTGGAATCAATCC 39735 Query 66547 GTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATT 66606 || || | || || || || |||| ||| | || | || ||| | ||| | Sbjct 39734 ATTTGAATATCCGTTTGTACCTCTGATGTAGGAGTCAGCAGCTCTTACATC--GGACACT 39677 Query 66607 CAGA--CCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAAT 66664 ||| || |||||||| || | ||| ||||| |||| | | || || Sbjct 39676 GAGACTCCGATACCACCAGCAGCCTTTGAGATAATAGCAATTTATTTTAAAGTTTCAAAA 39617 Query 66665 ATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTG 66724 || || ||||||||||| | || | || || | | |||| ||||| | | ||||| Sbjct 39616 ATACCATCAATGGAGTCTTCTTTTACAGTTAGCAAGAAGCAAGAACTCATCTAAGGTTTT 39557 Query 66725 GGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAA 66784 ||||| | | || || || || || || || ||||| | | || ||| || Sbjct 39556 GGTGTTCCAGAGTTAAACAGAGTTGGAGTGGCATGAGTAAACCACAGTTGACTCATCAAA 39497 Query 66785 TTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCC 66828 | ||| ||||||| | | |||| || ||| |||||| || Sbjct 39496 TCGTAAGTCTCGAACGCTGACTCAAGGTCTTCTTTATGAATACC 39453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397443377340800