Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq22 98.7 3e-16 >seq22 Length=30856 Score = 98.7 bits (108), Expect = 3e-16 Identities = 523/830 (63%), Gaps = 28/830 (3%) Strand=Plus/Plus Query 2101 CCAATGATGAACATCATCAACGGTGGTTCTCACTCAGACGCTCCAATC--GCTTTCCAAG 2158 ||||||||||| ||||||| |||||| | || | | | |||| | | |||| Sbjct 482 CCAATGATGAATGTCATCAATGGTGGTGCACATGCTAATAAT--AATCTGGATGCTCAAG 539 Query 2159 AATTTATGATTGTACCTGCTGGTGCACCAACATTCAAAGAAGCGCTTCGTTGGGGTGCTG 2218 | ||||||||| | |||| || ||||| | | |||||||| |||||| ||| | | Sbjct 540 AGTTTATGATTATGCCTGTGGGGGCACCTAGCCTTAAAGAAGCTATTCGTTATGGTTCAG 599 Query 2219 AAATCTTCCACGCGCTTAAGAAAATCCTTAAAGAACGTGGACTTGAAACAGCCGTAGGTG 2278 | | || || || | || |||| ||| ||||||||| | ||| | || || | Sbjct 600 AGACTTTTCAAGCATTGAAATCAATCTGTAATGAACGTGGATTCCCAACTTCTGTTGGCG 659 Query 2279 ACGAAGGTGGTTTCGCACCTCGTTTCGACGGAACTGAAGATGGTGTTGAAACTATCATCA 2338 | |||||||| || || ||| | || | | | | |||| | | |||| || || Sbjct 660 ATGAAGGTGGCTTTGCCCCTAATCTCAATAGTAATAAAGAAGCACTGGAAATGATTATTC 719 Query 2339 AAGCTATCGAAGCTGCTGGATATGTACCAGGTAAAGACGTATTTATCGGACTTGACTGTG 2398 | || || ||| ||||| ||||||||||| ||||| | | || | ||||| | Sbjct 720 AGGCAATTGAAAAGGCTGGCTATGTACCAGGCAAAGATATTATGATTGCTCTTGATCCGG 779 Query 2399 CATCATCTGAATTCTACGATGCAGAACGTAAAGTTTACGACTACACTAAATTTGAAGGTG 2458 | | || || || | || ||| || | ||||| | || | | | || Sbjct 780 CTGCCTCCGAGTTTT---ATAAAGATGGTCA---TTACGTTT----TA---TCG--GCTG 824 Query 2459 AAGGCGCTGCTGTTCGTACTGCTGCAGAACAA---ATCGACTACCTTGAAGAATTGGTTA 2515 |||| | || || |||| ||| || || || ||| | || || Sbjct 825 AAGG------TCTTAAATTAACTTCAGATCAAATGATTGATTATTGGGAAAACCTGATTG 878 Query 2516 ACAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGA 2575 | || || || || || || | ||||||||| || ||| | || || || |||| Sbjct 879 ATAATTATCCGATAATTTCTCTGGAAGATGGTTTGTCTGAAGAGGATAAAGATGGCTGGA 938 Query 2576 AATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAA 2635 | | || || | ||| | ||||| || |||||||| || || | || || | Sbjct 939 CAAAAATGCGTGCTCGGTTAGGTAGCAAAGTCCAGTTGGTTGGCGATGATGTATTTGTTA 998 Query 2636 CTAACACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCTTATCA 2695 |||| | | | | || || ||| | | | || || | | ||| | | Sbjct 999 CTAATCCAAAAATCTTGGCTAATGGAATTAAAAATAAAATGGCAAATGCCTTACTTGTTA 1058 Query 2696 AAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAG 2755 || | ||||| || ||||| || ||||| || |||| ||| | |||||||| ||| | Sbjct 1059 AAATCAACCAGATTGGTACCTTAACTGAGACCATTGAAGCTGTAGAAATGGCTAAAACTG 1118 Query 2756 CTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTG 2815 | || | || | || | || || ||||| || || || |||||||| ||| |||| Sbjct 1119 CGGGTTGGACTACGGTTATGTCTCATCGTTCTGGCGAGACGGAAGATTCGGTAATTGCTG 1178 Query 2816 ATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACC 2875 || |||| |||| || |||| |||||||| || |||||| |||| ||| | || | Sbjct 1179 ATCTTGCTGTTGGCTTAAATACTGGGCAAATTAAAACTGGTTCAATGTCGCGTTCAGATC 1238 Query 2876 GTATTGCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGGTGAA 2925 | || ||||| || || ||||| | || || ||||| || |||||| Sbjct 1239 GGATCGCTAAGTATAATCAATTAATCCGAATTGAAGAGATGCTGGGTGAA 1288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155990741971680