Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2605 262 2e-67 >seq2605 Length=7581 Score = 262 bits (290), Expect = 2e-67 Identities = 240/299 (80%), Gaps = 7/299 (2%) Strand=Plus/Plus Query 387 TGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATG 446 |||| ||||||| | | | ||||||||| |||||||||||||||||||||||| |||| Sbjct 4652 TGGCAAAATGGTTTTTACCCACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTATG 4711 Query 447 CGAGTGTTTGGGTGTCAAACCCGTG-CGCGTAATGAAAGTGAACGGAGGTGGGAACCCGT 505 ||||||| ||| ||| | ||||||||||| |||| | || || | Sbjct 4712 CGAGTGTGCTAGTGGAAAAACTAACACGCGTAATGAAGGTGATTGA---TGCCAAGCGC- 4767 Query 506 GAGGGTGCACCATCGACCGATCCTGATG-TCTTCGGATGGATTTGAGTAAGAGCATAGCT 564 | | ||| |||||||||| | |||| ||| || | |||||||| ||||||| | Sbjct 4768 -AAGCAGCAGCATCGACCGACCATGATCCTCTGGTGAAAGGTTTGAGTACGAGCATAAAT 4826 Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 4827 GTTAGGACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAAGCCAGGGGAAACTCTGG 4886 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||||||| |||||||||| ||||||||||||||||| || |||||||||||||||| Sbjct 4887 TGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCGAACTTGGGTATAGGGGCGA 4945 Score = 154 bits (170), Expect = 6e-35 Identities = 133/164 (81%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||||| |||||| ||||||| | | |||||| |||| |||||| |||| ||||||||| | Sbjct 4264 TTCGAAGAGTCGGGTTGTTTTGTATTGCAGCCCTAAGTGGGAGATAAACTTCTTCTAAGG 4323 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 ||||||||| || |||||||||| ||||||| |||| ||||||||||||| ||| Sbjct 4324 CTAAATATTAATAGGAAACCGATAGCGAACAAGTACTGTGAAGGAAAGATGAAAAGAACT 4383 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 ||| ||||||||| |||| || |||||| ||||| | ||||| Sbjct 4384 TTGAAAAGAGAGTCAAAA--GACTTGAAATCGTTGAGAAGGAAG 4425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079518275900