Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2605 643 0.0 >seq2605 Length=7581 Score = 643 bits (712), Expect = 0.0 Identities = 464/528 (88%), Gaps = 6/528 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| || ||||||||||||||||| Sbjct 6699 CTTTTGGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTACCCTAGGACACCTGCGTTATC 6640 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||| ||||| || || |||| Sbjct 6639 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACTATGTCTTCCACATAGATC 6580 Query 127 GGCCCGCGAAGGACCTT-AACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTG 185 || || | | ||| || |||| || | || || || | || | | || | Sbjct 6579 AGCA-GCAATGCTGCTTTAAAGCCATAACCTC-TCAAAGA-GAGG-GCTCTACCTAATGG 6524 Query 186 ATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTT 245 | ||||||||| || || || |||||||||||||||| ||||| || | ||||||||| Sbjct 6523 AATAAGTAAAATGACCATGAGAGTAGTGGTATTTCACTGACGCCGTAAAG-CTCCCACTT 6465 Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 || ||||||||| || | |||||||||||||||||||||||||||||||||||||||||| Sbjct 6464 ATACTACACCTCCCAGGCCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 6405 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct 6404 CTTTCCCCGCTGATTGTGCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATAGTAGAT 6345 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6344 AGGGACAGTGGGAACCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 6285 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6284 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 6225 Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 6224 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 6177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634832766784