Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2605 515 1e-143 >seq2605 Length=7581 Score = 515 bits (570), Expect = 1e-143 Identities = 398/466 (85%), Gaps = 9/466 (2%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| ||||||||||||||| | ||| |||||||||||||| ||||||||||||||||| Sbjct 2223 TATTTCTTGTCACTACCTCCCTGAGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCC 2164 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 || |||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 2163 TTAGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATCCTCCGTTA 2104 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 ||||| | ||||||||| ||| || ||||||||||||| |||| ||||||||| ||| Sbjct 2103 CCCGTGAACGCCATGGTAGTCCAATACACTACCATCGAAAGCTGATGGGGCAGAAACTTG 2044 Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGG 281 ||||| ||||| || ||| |||||||||||| | ||||||||||| || || | Sbjct 2043 AATGATGTATCGCGAGC-AAAGCCCATGCGATTCGATCAGTTATTATGAGTCGTCACAAT 1985 Query 282 AGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTT 339 || | | | | ||| ||| |||||||||||||||| ||||||| ||||| || || Sbjct 1984 AGACACAAGGAATATTGATTTGTTATCTAATAAATACAGCCCTTCCTAAAAGTCAGGCTT 1925 Query 340 TTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT-ACTATCAAA 398 |||||||||||||||||||||||||||||||||||||||| || | | ||||||| Sbjct 1924 AACAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--AATTTGATTATCAAA 1867 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA 458 ||||| ||||||| ||||||||||||||||||||||||||||||| | ||||||||| Sbjct 1866 TAAACTATAACTGTTTTAATGAGCCATTCGCAGTTTCACTGTATAACAT--TTATACTTA 1809 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1808 GACATGCATGGCTTAGTCTTTGAGACAAGCATATGACTACTGGCAG 1763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510060794368