Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq14466 152 4e-32 seq1053 131 1e-25 >seq14466 Length=3412 Score = 152 bits (168), Expect = 4e-32 Identities = 381/569 (67%), Gaps = 16/569 (3%) Strand=Plus/Minus Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073 || || |||||||| ||||||| || || || | ||| ||||||| ||| || |||| Sbjct 1986 GAAGCAAGGTTGCAAACAGCTACTTCATCTGGTGAGGTGTACTCGATAATCTCACAGCAC 1927 Query 66074 AGATTACTGCAGCGT---ATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG-CATGC 66129 | ||| | | | | ||||| || | |||| ||| || ||||||| ||| | || Sbjct 1926 AAATT---GGAACTTTTGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCTGTTGGCGTG- 1871 Query 66130 ATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCA 66189 |||||| |||| |||||| ||||| || || || | ||| || ||||| ||||| | ||| Sbjct 1870 ATCCTTATACAACATGTATGGAGTTCCAGTTTCGATTTGTGATTCAATAATGGCTTCCCA 1811 Query 66190 AAGAGCGCGTGCCTTCACCGTACGTACCGCCC-TACCTTTGCGTTCGTAATGTTCGTAGA 66248 ||| | || |||| || | | | || | |||| | || || | ||| | Sbjct 1810 AAGTTTTTGAGCTTTCATTGT-CTTTCTACCAATTCCTTATTGCTCATACTTAGTGTACA 1752 Query 66249 GGTGTTCGAAGGATTCACCCCATACTTCGGACAGACA--TGGACACTT-GTGTGGACACA 66305 | |||||| || ||| || ||| | || | ||| ||| || || || | Sbjct 1751 GTGCTTCGAATTCTTAACCATGAACGTCGAAGAGGCCCTTGG---CTTCGTTGGGGCAGA 1695 Query 66306 TCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGG 66365 || | ||| || || || || || | ||| |||| || || |||||||| | Sbjct 1694 AAAGTGTCCAGTCTCCGTCAGCTTGGACTCTCTTCATGAATAAGTCTGGAATCCAGAGAG 1635 Query 66366 CGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGA 66425 || |||| | || | ||||| ||| ||||| | |||||||| || | | | |||| Sbjct 1634 CGAAGAACAAGTCTCTTGCTCTTTGTTCCTCTTTACCGTGATTCTTTCTTAGTTGAAGGA 1575 Query 66426 ACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGC 66485 | || |||| || || ||||||||||||| ||| || ||||| || ||| | | |||| Sbjct 1574 AATCGAAGACATCTGCGTGCCATGGTTCCAAGTATATAGCGAATGAACCCTTTCTCTTGC 1515 Query 66486 CGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCC 66545 | || ||||||||||| || | ||| | ||||| || | | ||| || ||||| | Sbjct 1514 CACCTCCTTGGTCGACATATCTAGCAGTCTCATTGAAAACTCTGAGCATTGGCACGAGGC 1455 Query 66546 CGTTAGATTTGCCATTGGTGCCGTCGATG 66574 | ||| | ||||||||||| | |||| Sbjct 1454 CATTACTGTGACCATTGGTGCCCTTGATG 1426 >seq1053 Length=3228 Score = 131 bits (144), Expect = 1e-25 Identities = 349/531 (66%), Gaps = 2/531 (0%) Strand=Plus/Minus Query 66008 GCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCG 66067 |||| ||| || ||||| |||||||| | || || ||| |||| | ||||| || || Sbjct 1750 GCAATAGAAGCTAGGTTACAGACAGCCACTTCATCGGGACTGGTAAATTCGACGATCTCA 1691 Query 66068 GTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCAT 66127 ||||| || ||| | || ||||| | ||| | | ||| || | |||||| Sbjct 1690 GTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTAGATTTTCTATTGCAA 1631 Query 66128 GCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGC 66187 ||||| ||||| | ||| || ||||| || ||||| ||| ||||| ||||| | Sbjct 1630 GCATCTTTGTAGAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGATTTAACCC 1571 Query 66188 CAAAGAGCGCGTGCCTTCACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATGTTCGTA 66246 || || | ||||| || || | | || ||||| || || || | ||| Sbjct 1570 CAGAGCCATCTAGCCTTAACAGTTT-TGCGACCTCTACCAGTGGTCTCATACTCGATGTA 1512 Query 66247 GAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACAT 66306 || | || || ||||||||| | || | ||| || | | ||||||||| Sbjct 1511 AAGTTTCTCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCATTCATTTGGACACAT 1452 Query 66307 CAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGC 66366 ||| | |||||| ||| ||| || | | ||| || ||||| || |||| || || Sbjct 1451 CAGAGTCCAATCTTCATTTGCTTCAACTCTTCTCATGAAAAGATCTGGAGTCCAAAGAGC 1392 Query 66367 GTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAA 66426 |||||| || || | |||| | ||| || | |||||||| || | | | ||||| Sbjct 1391 GTAGAAAAGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTCTAAGTTAAAGGAA 1332 Query 66427 CTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCC 66486 || |||| || || ||||||||||| | |||| ||||| | ||| | | ||| || Sbjct 1331 GTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTCCCTTTCTTTTTCC 1272 Query 66487 GCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGG 66537 ||||||| |||||||| | ||| | |||||||| |||||| || Sbjct 1271 ACCACCTTAATCGACGTATCTTGCGGTGTCATTGAAGACCTTCAACATTGG 1221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397459182905120