Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq1719 351 2e-94 seq1384 322 9e-86 seq1404 132 9e-29 >seq1719 Length=1442 Score = 351 bits (388), Expect = 2e-94 Identities = 279/333 (84%), Gaps = 2/333 (1%) Strand=Plus/Plus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| |||||| |||||| ||| |||||| ||| | || |||||||||| ||||| || Sbjct 553 CCCGAACAGGGGAGTGAAA-AGAACCTGAAACCGTGTGCTTACAAGCGGTTGGAGCAGAC 611 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 ||| ||||| |||||||||||||||||||||||||||||||| || | | || || Sbjct 612 AAGTTCTGTGACAGCGTGCCTTTTGCATAATGAGCCTACGAGTTACTCTTGTCTGGCAAG 671 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 |||||| ||||||| || |||||||| ||||||||| ||||| |||||| ||| Sbjct 672 GTTAAGTCCTTCAGGGACGC-AGCCGAAGCGAAAGCGAGTCTTAATAGGGCGCATAGTCA 730 Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243 | | | |||||||||||||||||||||||||| | |||||||||||| || ||||| Sbjct 731 GATGAGGTAGACGCGAAACCTTGTGATCTACCCTTGGGCAGGTTGAAGTTGCAGTAACAT 790 Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGT 303 || |||||||||||||||| ||||||||||||||||| |||||||| | |||||||||| Sbjct 791 GTAATGGAGGACCGAACCGATAAACGTTGAAAAGTTTCCGGATGACCTGAGGGTAGGGGT 850 Query 304 GAAAGGCCAATCAAACTGGGAAATAGCTCGTAC 336 ||||||||||||||||||||||||||||||||| Sbjct 851 GAAAGGCCAATCAAACTGGGAAATAGCTCGTAC 883 >seq1384 Length=2115 Score = 322 bits (356), Expect = 9e-86 Identities = 268/324 (83%), Gaps = 3/324 (1%) Strand=Plus/Plus Query 14 GGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGGTG 73 || |||||| ||| |||||| || |||||||||||||||||||||| | | |||| Sbjct 1786 GGAGTGAAACAGATCCTGAAACCATGCGCCTACAAGCGGTCGGAGCCCTTTAGTGGGGTG 1845 Query 74 ACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGGCT 133 ||||||||||||||||||||||||||||||||||| ||| || || ||| ||||| || Sbjct 1846 ACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAA-CGTTGCCGGCAAGGATAAGGACT 1904 Query 134 TCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG-AGTTGGTGGCGCTA 192 ||||| ||| | ||| || ||||||||| || || |||||| | ||| ||| | | || Sbjct 1905 TCAGGTCCGG-ATCCGTAGCGAAAGCGAGTCTGAATAGGGCGCCATAGTCGGTAGTGTTA 1963 Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAG 252 ||||||||||| ||||||||||||| | ||||| ||||| | |||||| | | ||||| Sbjct 1964 GACGCGAAACCGTGTGATCTACCCATGGGCAGGATGAAGCTGTGGTAACACATAGTGGAG 2023 Query 253 GACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCA 312 | |||||||||| |||||||||||| |||||||||| | ||||||||||||||||||| Sbjct 2024 GTCCGAACCGGTTGACGTTGAAAAGTCTTCGGATGACCTGTGGGTAGGGGTGAAAGGCCA 2083 Query 313 ATCAAACTGGGAAATAGCTCGTAC 336 |||||||| ||||||||||||||| Sbjct 2084 ATCAAACTCGGAAATAGCTCGTAC 2107 >seq1404 Length=2053 Score = 132 bits (146), Expect = 9e-29 Identities = 234/337 (69%), Gaps = 13/337 (4%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||||||| | |||| || | | ||||| | ||| ||| | Sbjct 1459 CCCGATGAGGGGAGTGAAATAGATCTTGAAACCATACACTTACAAACAGTCAGAGG---G 1403 Query 64 TGATTCGG-----TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCA 118 | ||| ||| | ||| |||||||||| |||| | ||||||| | | Sbjct 1402 TTATTGTAAAGCCTGATGACGTACCTTTTGCATTATGATTCAGCGAGTTA-TGATATGTT 1344 Query 119 GCGAGGTTAAGGGCTTCAGGCCCGT-TAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGAC 177 ||||||||||| || || || |||||| || |||| |||| || || ||||||| Sbjct 1343 GCGAGGTTAAGCCGTT---GCAGGTGTAGCCGTAGGGAAACCGAGTCTGAATAGGGCGAT 1287 Query 178 GAGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGG 237 ||| | | ||||| |||||| ||| ||| ||| || |||||||||| | || Sbjct 1286 TAGTAGCATGTCATAGACCCGAAACGGGATGAGCTAGCCATGAACAGGTTGAAGCGGGGG 1227 Query 238 TAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGT 297 ||| | | ||||||||||||| || | |||||||| | | |||||| | | || | Sbjct 1226 TAATACCTCGTGGAGGACCGAACTCGTGACGGTTGAAAACGTCTGGGATGATTTGTGGTT 1167 Query 298 AGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||||||| | | |||||| || Sbjct 1166 AGGGGTGAAAGGCCAATCAAATTCCGTGATAGCTGGT 1130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972777178112