Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2057 116 7e-24 seq1901 89.7 9e-16 >seq2057 Length=1129 Score = 116 bits (128), Expect = 7e-24 Identities = 110/138 (80%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 993 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 1052 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | || | ||||| |||||| | ||| || |||||||| Sbjct 1053 GGGATAACATCATAGGA-TTTCGATCCTATTCTGTTGGCCTTCGGGATCGGAGTAATGAT 1111 Query 191 TAATAGGGATAGTCGGGG 208 ||| ||||| |||||||| Sbjct 1112 TAACAGGGACAGTCGGGG 1129 >seq1901 Length=1246 Score = 89.7 bits (98), Expect = 9e-16 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGA 133 ||||| |||||||||||||||||||| | ||||| ||| || ||||||||||||||||| Sbjct 69 TTTACCTTGAAAAAATTAGAGTGTTCCAGGCAGGTCTTCGCCGGAATACATTAGCATGGA 10 Query 134 ATAATAGAA 142 ||||| ||| Sbjct 9 ATAATGGAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915178529408