Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq1384 165 8e-39 seq1719 163 3e-38 seq2052 116 4e-24 >seq1384 Length=2115 Score = 165 bits (182), Expect = 8e-39 Identities = 142/174 (82%), Gaps = 4/174 (2%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 || |||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| Sbjct 1289 GGGGGATGCCTAGGCTCTCAGAGGCGAAGAAGGACGTGATAAGCTGCGATAAGCTTCGGG 1348 Query 68 GATTGGCACATACG-AATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAG 126 || |||||| ||| | | ||||| |||| |||||||||||||||||| || ||| || Sbjct 1349 GAGCGGCACACACGCACTATATCCGAAGATTTCCGAATGGGGCAACCCGGCATGTTGAAG 1408 Query 127 ATATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 | || ||| | || || | | ||| ||| | ||||||||||||||||||| Sbjct 1409 ACATGTCACATCGATA---GATGGGCAAACCCGCTGAACTGAAACATCTAAGTA 1459 >seq1719 Length=1442 Score = 163 bits (180), Expect = 3e-38 Identities = 149/182 (82%), Gaps = 12/182 (7%) Strand=Plus/Plus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| |||| |||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 66 GGCACACGGGGGATGCCTAGGCTCTCAGAGGCGAAGAAGGACGTGATAAGCTGCGATAAG 125 Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGA-TAT 119 || ||||||||||| || ||| ||||||| |||| |||||||||||||||| || ||| Sbjct 126 CTTTGGGGATTGGCAAATGCGACTTGATCCAGAGATTTCCGAATGGGGCAACCTGACTAT 185 Query 120 ATTGGAGATATA-TCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAG 178 ||| ||| ||| || || || | ||||||| | ||||||||||||||||| Sbjct 186 -TTGAAGA-ATAGTCGTA----TA----AAACGCGAACGCGCTGAACTGAAACATCTAAG 235 Query 179 TA 180 || Sbjct 236 TA 237 >seq2052 Length=1134 Score = 116 bits (128), Expect = 4e-24 Identities = 139/181 (77%), Gaps = 12/181 (7%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| | |||||| ||||||||||||| |||||||||||| |||| Sbjct 574 GGTGGATGCCTTGGCGATGATAGGCGACGAAGGACGTGATAGCCTGCGAAAAGCTTCGGG 515 Query 68 GA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAAC---CCGATA--TAT 121 || ||||| || | |||||||| |||||||||||||||| ||| |||| | ||| Sbjct 514 GAGCTGGCAAATTAGCTTTGATCCGGAGATATCCGAATGGGGAAACCCACCGAAAGGTAT 455 Query 122 TGGA-GATATAT-CATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGT 179 | | ||| || |||| | | ||| |||||||| || |||||||||||||| ||| Sbjct 454 CGCATGATGAATACATA--GTCATGCG--AGGCGAACCGGGTGAACTGAAACATCTCAGT 399 Query 180 A 180 | Sbjct 398 A 398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476789163826