Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq1681 324 4e-86 seq1384 136 1e-29 >seq1681 Length=1492 Score = 324 bits (358), Expect = 4e-86 Identities = 314/399 (79%), Gaps = 6/399 (2%) Strand=Plus/Plus Query 15 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCG 74 ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| Sbjct 772 AAGCACCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGTGCAAGCGTTGTTCG 831 Query 75 GAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGG 134 || ||| ||||||||||||| ||| |||||| || ||| ||| ||||||||| | ||| Sbjct 832 GATTTATTGGGCGTAAAGCGCGCGTAGGCGGACCTGCAAGTCAGATGTGAAATCTCGGGG 891 Query 135 CTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGG--GTGGA 192 || ||||| | || ||| | || ||| || | ||||| | || ||||||| | ||| Sbjct 892 CTCAACCTCGAAACTGCGTCTGAAACTACAGGTCTAGA--ATCTCGGAGGGGGAAGGGGA 949 Query 193 ATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGC 252 || | | ||||| || |||| |||||||||| | ||||||||| ||||||||| | Sbjct 950 ATATCGCATGTAGGGGTAAAATCCGTAGATATGCGATGGAACACCAGAGGCGAAGGCGCC 1009 Query 253 CCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATAC 312 ||||| | | ||||||| | || |||||||||||||| ||||||||||||||||| Sbjct 1010 TTCCTGGACGAGTATTGACGCTGAGGCGCGAAAGCGTGGGGATCAAACAGGATTAGATAC 1069 Query 313 CCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGG-GGATTT-ACTTCCTTGGT 370 ||||||||||||||| |||||||| ||||| | |||| |||||| || | | || Sbjct 1070 CCTGGTAGTCCACGCTGTAAACGATGAACACTAGATATTGGAGGATTTGACCCCTTCAGT 1129 Query 371 AACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 |||||||||||||| |||| ||||||||| | ||| Sbjct 1130 GTCGTAGCTAACGCGTTAAGTGTTCCGCCTGGGAAGTAC 1168 >seq1384 Length=2115 Score = 136 bits (150), Expect = 1e-29 Identities = 132/169 (78%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 245 AAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGA 304 |||||||| | || | | | ||||||| ||||||||||||||||||| | ||||||| Sbjct 1 AAGGCAGCTCACTAAGCTGGTATTGACGCTGATGCACGAAAGCGTGGGGATCGAACAGGA 60 Query 305 TTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACTTC 364 ||||||||||||||||||||||||||||||||| |||| | |||||| ||| || | Sbjct 61 TTAGATACCCTGGTAGTCCACGCCCTAAACGATGATAACTCGATGTTGGCGATAGACAGC 120 Query 365 CTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATACTCCC 413 | || | ||| || |||| ||||| || |||||||| ||| ||| Sbjct 121 CAGCGT--CCAAGCGAAAGCGTTAAGTTATCCACCTGGGGAGTACGCCC 167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289569745984