Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq1404 271 2e-70 seq822 138 3e-30 >seq1404 Length=2053 Score = 271 bits (300), Expect = 2e-70 Identities = 253/320 (79%), Gaps = 1/320 (0%) Strand=Plus/Plus Query 98 ACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGG 157 ||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||| Sbjct 1 ACCCGACTAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGG 60 Query 158 CTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGG 217 |||| || | |||||| | | | ||||| | | |||||||||| |||||||||||| Sbjct 61 CTTCAATTCAAAGCTTCTCTTGCGATAACCTCTCCTTTTAACCTTCCAGCACCGGGCAGG 120 Query 218 CGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTC 277 ||||| || ||||| ||||||| |||||||||| || |||||||||| |||||||||| Sbjct 121 CGTCAGCCCATATACTTCCACTTACGTGTTTGCATAGACCTGTGTTTTTGATAAACAGTC 180 Query 278 GCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACGGAGCAAGTCCT-TCACCCTCACC 336 || | ||| | || ||||| || ||||| ||||||| | | ||| ||| Sbjct 181 GCTACCCCCTTTTCACTGCGACCTCCAACAGCTTGACCAGCAAGTGATCTTACCATCAAA 240 Query 337 GGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCT 396 |||| ||||||||||||||||||| || ||||| |||||||| | |||||||| Sbjct 241 GGCGTGCCTTCTCCCGAAGTTACGGCACCAATTTGCAGAGTTCCTTAACAAGAGTTCTCC 300 Query 397 CAAGCGCCTTGGTATTCTCT 416 ||||||||| | ||||||| Sbjct 301 CAAGCGCCTGAGGATTCTCT 320 >seq822 Length=9602 Score = 138 bits (152), Expect = 3e-30 Identities = 194/271 (72%), Gaps = 11/271 (4%) Strand=Plus/Minus Query 11 CTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCG 70 ||||||||||||||| | |||||||||| ||| ||||||||| || ||| Sbjct 8573 CTGCATCTTCACAGCAAATTCAATTTCATAGAGCTGATATTGGAGACAGTAGGGCAGTCG 8514 Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 |||| ||||||||||||| ||||||||||||| ||||| |||| |||||||||||||| | Sbjct 8513 TTACTCCATTCGTGCAGGACGGAACTTACCCGTCAAGGGATTTTGCTACCTTAGGACCAT 8454 Query 131 TATTGTTACGGCCGCCGTTTACCGGGGCTT-CGATCAAGAGCTTCGCGTTAGCTAACC-C 188 | |||| |||||||||||| | |||| ||||| ||| ||||||| Sbjct 8453 CAGAGTTATGGCCGCCGTTTATTGCTGCTTGTTATCAACAGC---------GCTAACCGT 8403 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | | || | | | ||||||||||| |||| | ||||| || || ||| Sbjct 8402 TAAAACTTTGCATGACAACACCGGGCAGGAGTCAGATTTTATACATCATAATTAAATTTT 8343 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 ||| | | | |||||||| ||||||||||| Sbjct 8342 GCAAAATCTTATGTTTTTAGTAAACAGTCGC 8312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260770421632