Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq1404 224 2e-56 seq822 149 1e-33 >seq1404 Length=2053 Score = 224 bits (248), Expect = 2e-56 Identities = 226/299 (76%), Gaps = 26/299 (9%) Strand=Plus/Plus Query 92 ACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGG 151 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ACCCGACTAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGG 60 Query 152 CTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCCTTAACCTTCCAGCACCGGGCAGG 211 ||| | |||| ||||| |||| |||| ||| ||||||||||||||||||||||| Sbjct 61 CTTCAATTCAAAGCTTCTCTTGCGATAACCTCTCCTTTTAACCTTCCAGCACCGGGCAGG 120 Query 212 CGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTC 271 ||||||| | ||||| || ||| || || ||| | ||||||||||||| ||||||||| Sbjct 121 CGTCAGCCCATATACTTCCACTTACGTGTTTGCATAGACCTGTGTTTTTGATAAACAGTC 180 Query 272 GCTTGGGCCTATTCTCTGCGGCCT-------------------GTCAT-------AGACA 305 ||| ||| ||| ||||| ||| || || | | Sbjct 181 GCTACCCCCTTTTCACTGCGACCTCCAACAGCTTGACCAGCAAGTGATCTTACCATCAAA 240 Query 306 GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 ||| ||||||||| ||||||||| || ||||| |||||||||||||| ||||||| Sbjct 241 GGCGTGCCTTCTCCCGAAGTTACGGCACCAATTTGCAGAGTTCCTTAACAAGAGTTCTC 299 >seq822 Length=9602 Score = 149 bits (164), Expect = 1e-33 Identities = 248/353 (70%), Gaps = 18/353 (5%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | |||||||| ||| || | |||||||| | ||||| Sbjct 8571 GCATCTTCACAGCAAATTCAATTTCATAGAGCTGATATTGGAGACAGTAGGGCAGTCGTT 8512 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || || ||||||| || ||||||||||||| ||||| |||| |||||||||||||| | | Sbjct 8511 ACTCCATTCGTGCAGGACGGAACTTACCCGTCAAGGGATTTTGCTACCTTAGGACCATCA 8452 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGAT-C 185 ||||| |||||||||||| || |||| ||| || | || ||||| | | Sbjct 8451 GAGTTATGGCCGCCGTTTATTGCTGCTT--GTT------ATCAACAGCGCTAACCGTTAA 8400 Query 186 CCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCA 245 ||| | | || ||||||||||| ||||| | |||||||| | | | || ||| Sbjct 8399 AACTTTGCATGACAACACCGGGCAGGAGTCAGATTTTATACATCATAATTAAATTTTGCA 8340 Query 246 GAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGACA 305 || | | ||||||| ||||||||||||| || ||| | | | | | ||| Sbjct 8339 AAATCTTATGTTTTTAGTAAACAGTCGCTACCCCCCATTTTTT----TATTTGCT-GAC- 8286 Query 306 GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATA 358 |||| || |||| ||||||| || ||||||||||||||||| ||||| Sbjct 8285 -GCACTTTTTATCCCGAAGTTACAAAGTAATTTTGCCGAGTTCCTT--CAATA 8236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062375076096