Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq1384 417 2e-114 seq1681 329 1e-87 >seq1384 Length=2115 Score = 417 bits (462), Expect = 2e-114 Identities = 399/501 (80%), Gaps = 11/501 (2%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 161 TACGCCCGCAAGGGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGAGGAGCAT 220 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| | |||||| |||||||||| ||||| | ||| | Sbjct 221 GTGGTTTAATTCGATGATACGCGAGGAACCTTACCCGGGCTTGAAAGTTAGTGAAGAGTG 280 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGAC-AGGTGATGCATGGTTGTCGTCA 179 ||||| | ||| |||||| || | || ||||| ||||||| |||||||| Sbjct 281 CAGAGACGCACTCGTCC--TTCGGGACACGAA---ACTAGGTGCTGCATGGCTGTCGTCA 335 Query 180 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTG 239 ||||||| |||||| |||||||||||||||||||||||||||||||| || | ||||||| Sbjct 336 GCTCGTGCCGTGAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCTATGTTTAGTTG 395 Query 240 CCATCAT-TAA-GTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCG-GAGGAAGGTGG 296 ||| ||| ||| | |||| ||||||| ||||||| ||| ||||| | |||||||| || Sbjct 396 CCAGCATGTAATGGTGGGGACTCTAAACAGACTGCCTGTG-CAAACAGAGAGGAAGGAGG 454 Query 297 GGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACA 356 |||||||||||| |||||||| |||||| | ||||||||||||||||||||||||| Sbjct 455 GGACGACGTCAAGTCATCATGGCCCTTACGTCCGGGGCTACACACGTGCTACAATGGACG 514 Query 357 ATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGG 416 |||| |||||||| | | || | || || |||| || |||| |||| |||||||| Sbjct 515 GTACAGAGGGCAGCTAGATAGCAATATCGTGCCAATCTCAAAAAGCCGTTCACAGTTCGG 574 Query 417 ATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-AT 475 || | |||||||||||||| ||||| |||| ||||||||||||| |||||| || Sbjct 575 ATCGGGGTCTGCAACTCGACCCCGTGAAGTTGGATTCGCTAGTAATCGCGTATCAGCAAT 634 Query 476 GCTACGGTGAATACGTTCCCG 496 | ||||||||||||||||| Sbjct 635 GACGCGGTGAATACGTTCCCG 655 >seq1681 Length=1492 Score = 329 bits (364), Expect = 1e-87 Identities = 272/329 (83%), Gaps = 6/329 (2%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| | |||||||||||||||||||||| ||||||||||||||||| || Sbjct 1166 TACGGTCGCAAGACTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGATTAT 1225 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGA--CCCC 118 ||||||||||||||||||||||| ||||||||||| | ||||| ||||| || ||| Sbjct 1226 GTGGTTTAATTCGAAGCAACGCGCAGAACCTTACCTAGGCTTGAAATCCTACGAATCCCT 1285 Query 119 TCTAGA-GATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGT 177 | || | || ||| | | |||||| | | ||||||||| | ||||||| |||||| Sbjct 1286 TTTAAACGAGGGAG---TGCTCTTCGGAGAATGTAGTGACAGGCGCTGCATGGCTGTCGT 1342 Query 178 CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGT 237 ||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| Sbjct 1343 CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCTCGCAACGAGCGCAACCCCCATTTTTAGT 1402 Query 238 TGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGG 297 ||||| ||||||||||||||||||| ||||||| | | || | ||||||||||||| Sbjct 1403 TGCCAGCATTAAGTTGGGCACTCTAGAAAGACTGCCTGGGCTAACCAGGAGGAAGGTGGG 1462 Query 298 GACGACGTCAAATCATCATGCCCCTTATG 326 || |||||||| || ||||| |||||||| Sbjct 1463 GATGACGTCAAGTCCTCATGGCCCTTATG 1491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503964716160